Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06229 ATGGCAGTGTCTAGCAACCCTCAAGATGCTGCCAGAGCATTGGGTGTTCTGAACTTCACTCCTCTTAACAATAAGCCCATCCGTATTATGTATTCGCATCGTGATCCAAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATAAAGAATTTGGACAAGGCAATTGACCACAAGGCGTTACATGATACCTTTTCTACTTTTGGGAATATCCTTTCTTGCAAGGTTGCTACTGATGCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTCGATACTGAGGAGGCTGCTCAAAAGGCCATAGAGAAGCTGAATGGTATGCTATTGAATGATAAGCAAGTGTATGTGGGACCCTTCCCTCGCAAGCAAGACAGAGAGACTGCCATTGAAAGGGCAAAATTCAATGATGTTTTTGTAAAGAATCTATCAGAATCCACCACTGATGATGAATTAAAGAATATTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGAGATGGGAAGTCAAAGTGCTTTGGATTTGTAAACTTTGAGAATGTTGTTTCTAATTTCTTTGTTGAGTTACTTTCTTGGTTTCAAGTTGGTATTGGTTAA 609 0.3957 MAVSSNPQDAARALGVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDASGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFPRKQDRETAIERAKFNDVFVKNLSESTTDDELKNIFGEFGTITSAVVMRDGDGKSKCFGFVNFENVVSNFFVELLSWFQVGIG. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06229 202 CDD RRM2_I_PABPs 42 118 IPR045305 -
Seca3g06229 202 PANTHER RNA BINDING PROTEIN 5 185 - -
Seca3g06229 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
Seca3g06229 202 Gene3D - 123 187 IPR012677 -
Seca3g06229 202 Gene3D - 5 116 IPR012677 -
Seca3g06229 202 SMART rrm1_1 45 117 IPR000504 GO:0003723
Seca3g06229 202 SMART rrm1_1 136 200 IPR000504 GO:0003723
Seca3g06229 202 Gene3D - 40 94 IPR012677 -
Seca3g06229 202 SUPERFAMILY RNA-binding domain, RBD 45 186 IPR035979 GO:0003676
Seca3g06229 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Seca3g06229 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 185 IPR000504 GO:0003723
Seca3g06229 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 184 IPR000504 GO:0003723
Seca3g06229 202 FunFam Polyadenylate-binding protein 38 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06229 Seca-Chr3 131899904 131900512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06229 5 185 Eukaryotic Initiation Factors Gene Family AT4G34110 76.243 3.35e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06229 K13126 - gmx:100813735 322.398