Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06211 ATGTCTAGTATTGACGTAAATTTGTTTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAAAACACGGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACACCACCAATGATGCTATGTTGTGTGTTGCTTGCCGAGAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACACCGGAGCAAAGGAATCAATTGGTGACTTTTGCTGAGGGGTTTGGGTGGAAACCTAAAATGGAAAACAAGGAAGAAATCCAGTGTTTCTGCTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAATCGTCATCGAGCAACACACAATAATTAA 372 0.4274 MSSIDVNLFGIVFEQKVVYKECRHNLAAKHGLVFHDGCLEFVKDTTNDAMLCVACREPPMKKRRTRFTPEQRNQLVTFAEGFGWKPKMENKEEIQCFCSEMGITHKILMVWLNNNRHRATHNN. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06211 123 SUPERFAMILY Homeodomain-like 55 119 IPR009057 -
Seca3g06211 123 Gene3D - 54 122 - -
Seca3g06211 123 Pfam ZF-HD protein dimerisation region 17 55 IPR006456 -
Seca3g06211 123 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 61 118 - -
Seca3g06211 123 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca3g06211 123 NCBIfam homeobox domain, ZF-HD class 61 116 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06211 Seca-Chr3 130975124 130975629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06211 61 117 ZF-HD Transcription Factor Family AT5G65410 43.860 3.18e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca3g06211 ZF-HD_dimer 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06211 - - gmx:102668663 118.242