Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06202 ATGCAGCAAGATCAGCTCAAGAAGGATATTAAAGAGGTAGAGTTTTTTACTGAGTATGGGGATGCCAACAGATACAAAATTCTTGAAGTTATTGGGAAAGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACACACACAGGGGGAAAAGTTGCAATAAAGAAGATTCATAACATTTTTGAACATATCTCTGATGCCATTAGAATCCTCCGGGAAGTCAAGTTGCTAAGACTTTTAAGACACCCTGATATCGTTGAGATTAAGCGGATCATGTTGCCACCTTCAAAGAGGGAGTTTAAAGATATTTATGTAGTCTTTGAGCTCATGGAATCTGATCTCCATCAAGTCATCAAAGCTAATGATGACTTGACTCGTGAACACCATCAGTTTTTTCTTTATCAGATGCTACGTGCATTGAAGTATATGCATACAGCAAATGTATATCACAGAGACCTTAAGCCCAAGAATATACTGGCAAACGCAAACTGCAAACTCAAAGTATGTGATTTTGGACTGGCAAGAGTTGCATTCAATGATGCCCCAACAACAATTTTTTGGACGGATTATGTTGCTACAAGATGGTACAGAGCCCCGGAATTGTGTGGGTCTTTCTTTTCAAAGCAATATGGGAGGACTATTGATCTCTCCTGGAAGTTGAATTTATCTGTCCTTCAGTATACACCAGCAATTGATATATGGAGCATTGGATGCATTTTTGCAGAGGTGCTAACAGGAAAGCCATTGTTTCCTGGTAAAAGTGTTGTGCATCAATTAGATTTGATTACTGATCTTCTTGGGACACCACCACCTGAAACTATTACAGGAGTTCGAAATGAGAAGGCTAGGAAGTACTTGATGGAAATGCGGAAGAAACCTCCTGTGCCATTTGAACAGAAATTTCCAAATGCCGATCCATTGGCACTTCGCCTACTACAAAGGCTTTTAGCATTTGATCCAAAGGATCGGCCAACTGCTCAAGAGGCACTAGCTGATCCTTTCTTTAAGGGTTTGGCCAAAGTTGAGAGAGAACCTTCTTCTCAGCCAATTTCAAGATTGGAATTTGAGTTTGAGAGAAGACGGGTGACAAAGGAGGATGTTAGGGAATTATTATATAGGGAAATACTTGAATATCATCCTCAGCTGCTTAAAGATTACATAAATGGACTTGAAGGCACAAACTTCCTCTACCCTAGTGCAGTAGATCAATTCAGAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGGGGCCCAGTGATTCCTCCAGAAAGGAAGCATGTCTCCCTTCCAAGGTCCACTGTTCACTCTAGTACAATTCCTCCTACTACACAGCCATCTTTTGCTTCATATGAGAACAAGCGGATCATAGAAGAGGCATCCAAGATTTCAAGAGCAGCAGAATCAAACTCTGGAAGTCAATTGAGGAGTTCACGACCTCCGCCAAGGGCGCCAACAACCAAACCAGGTAGAGTTGTAGGGCCAGTTAACTATGACAACGCGACAAACATAAAAGATACTTATGACTCAAGGATCTTCTACCGGAATACTCTTCCTCAGGCAATCTCTCCACACTGTTTCCATAGGGTGCACCCCAATAACGCAAAAACTACATCAGAAACATATAAGGATATTTCACAAGGCAAACATCAACTTCCATCCCAGCAGTGTAGCATGCCAGCCAGACCAGCTATTGATCTTAATACCAATCCATATTTCCAGCAGGGCAAAAATGATCACTTAAATGATCCTGTCACTGCAATTGATGCAAAACTGATTCAGGCACAATCTCAATTTGGTGCTGCTGGTGCTGCGGCAGTAGCTGTTGCTGCTCACAGGCATCCAGGGGTCTTTCAGTATGGATTGTCATAG 1872 0.4167 MQQDQLKKDIKEVEFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKIHNIFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTIFWTDYVATRWYRAPELCGSFFSKQYGRTIDLSWKLNLSVLQYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPPPETITGVRNEKARKYLMEMRKKPPVPFEQKFPNADPLALRLLQRLLAFDPKDRPTAQEALADPFFKGLAKVEREPSSQPISRLEFEFERRRVTKEDVRELLYREILEYHPQLLKDYINGLEGTNFLYPSAVDQFRKQFAYLEENHGKRGPVIPPERKHVSLPRSTVHSSTIPPTTQPSFASYENKRIIEEASKISRAAESNSGSQLRSSRPPPRAPTTKPGRVVGPVNYDNATNIKDTYDSRIFYRNTLPQAISPHCFHRVHPNNAKTTSETYKDISQGKHQLPSQQCSMPARPAIDLNTNPYFQQGKNDHLNDPVTAIDAKLIQAQSQFGAAGAAAVAVAAHRHPGVFQYGLS. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06202 623 Pfam Protein kinase domain 25 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06202 623 Gene3D Phosphorylase Kinase; domain 1 23 368 - -
Seca3g06202 623 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 368 - -
Seca3g06202 623 FunFam Mitogen-activated protein kinase 14 119 - -
Seca3g06202 623 ProSiteProfiles Protein kinase domain profile. 25 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06202 623 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Seca3g06202 623 Gene3D Transferase(Phosphotransferase) domain 1 109 361 - -
Seca3g06202 623 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca3g06202 623 MobiDBLite consensus disorder prediction 464 498 - -
Seca3g06202 623 MobiDBLite consensus disorder prediction 414 452 - -
Seca3g06202 623 SMART serkin_6 25 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06202 623 MobiDBLite consensus disorder prediction 432 451 - -
Seca3g06202 623 SUPERFAMILY Protein kinase-like (PK-like) 21 338 IPR011009 -
Seca3g06202 623 FunFam Mitogen-activated protein kinase 111 357 - -
Seca3g06202 623 MobiDBLite consensus disorder prediction 464 481 - -
Seca3g06202 623 CDD STKc_TDY_MAPK 24 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06202 Seca-Chr3 130786847 130791843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06202 1 621 MAP Kinase Gene Family AT1G53510 68.847 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca3g06202 Pkinase 1.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06202 - - gmx:100800878 1079.32