Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06194 ATGACTGCATGGTTCTGGATTGTTTGGATTGAGCTGCTTAGGATGTACATGGTTAATTGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGCCGTAGACTCCTTGCAGGCCATAATGAGCGTAGAAGAAAACCACAAGCTTCTGAAGATGCTAAAAAGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCTGAAATCGAGAGTGCTAGAGCTGTGGTGCTGAGAATTGGGGAGGCACTTGAGGAACAAGAAAAGGCTTCCCAAGCTTCTAAACCACAGGATGTTGATGGACTAGTAGAAGAGGTTCAAGAGGCTAGAAGAATCAAATTGTTGCATCAGCCGAGCAAGGTGCATTACTTTTTGCTTTCTTAA 381 0.4331 MTAWFWIVWIELLRMYMVNWFHLLAEFDDGKRSCRRLLAGHNERRRKPQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKASQASKPQDVDGLVEEVQEARRIKLLHQPSKVHYFLLS. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06194 126 PANTHER STOMATAL CLOSURE-RELATED ACTIN-BINDING PROTEIN 1 49 120 IPR039640 GO:0003779|GO:0007015|GO:0010119
Seca3g06194 126 SUPERFAMILY SBT domain 20 51 IPR036893 GO:0003677|GO:0005634
Seca3g06194 126 Pfam SBP domain 20 47 IPR004333 GO:0003677
Seca3g06194 126 ProSiteProfiles Zinc finger SBP-type profile. 1 48 IPR004333 GO:0003677
Seca3g06194 126 Pfam Coiled-coil regions of plant-specific actin-binding protein 49 120 IPR032009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06194 Seca-Chr3 130709921 130712107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06194 21 48 SBP-box Gene Family AT1G69170 89.286 2.62e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g06194 SCAB_CC 9.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06194 K26540 - gmx:100798320 137.502