Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06155 ATGAAGATTCAGTGCAACGTGTGTGAAGCTGCGGAAGCTAAGGTTCTGTGCTGTGCTGATGAGGCGACACTGTGTTGGGAATGTGATGAGAAGGTTCATGCAGCTAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTTTCTAGCTCTTCCTCTCATATTCCTAAATGTGATATTTGTCAGTTCAAAAGAGTTAGAAGTGTTTGTCATTTTGCATCAGCATGTGATGATGGTAGAGTTTGCTACCCCTTACAGGAAGCATTAGGCTATTTTTTCTGTCTGGAGGATCGAGCTTTACTTTGCAGAAAATGCGATTTGGCAATACACACTGCAAATGCATATGTCTCCGGTCATCAAAGGTTTCTTCTCACTGGTGTTAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGCTTCATCATCTTCTTTGAAATCAGATTCTGGGGAGAAAGTTTCTGATACAAAATCATCTTCTGTCTCTAGAAAGGTTTCCACAATGCCTCAGTCATCAGATTACAATGAAGTTTTACCCACTGAAGTTGGAGGAGGTGGGGAGTTTCCACCAGCTAAGGTGTCATATGGTGGTGGTTCTACAGCTGGAAACATGTCACAGTGGACGCTTGATGAATTTCTTGGCCTAAACGAGTTAAATCAGAATTATAATTACATGGAAGAATCATCAAGGCCTGATAGTGGTAAGCTTGGGGATTCTGATTCTCCTGTATTAAGATCCAGTGAAGAGGAAATGGAGGATGATGACTACTTACGACGTTCATCATGGACAGTTCCTCAGATACCTTCCCCTCCTACAGCTTCTGGGTTAAACTGGCCAAAAGAACCTCAATATTCATCTAATAGTGCTTTATTTGTTCCTGACATTTGCTTTTCTAGCATGCAAAGGCCACACAAAAGTATATTTTCAAGACCAAGGAGGCATCTTTAA 939 0.4217 MKIQCNVCEAAEAKVLCCADEATLCWECDEKVHAANKLASKHQRVPLSSSSSHIPKCDICQFKRVRSVCHFASACDDGRVCYPLQEALGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKSDSGEKVSDTKSSSVSRKVSTMPQSSDYNEVLPTEVGGGGEFPPAKVSYGGGSTAGNMSQWTLDEFLGLNELNQNYNYMEESSRPDSGKLGDSDSPVLRSSEEEMEDDDYLRRSSWTVPQIPSPPTASGLNWPKEPQYSSNSALFVPDICFSSMQRPHKSIFSRPRRHL. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06155 312 SMART bboxneu5 76 123 IPR000315 GO:0008270
Seca3g06155 312 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca3g06155 312 MobiDBLite consensus disorder prediction 134 191 - -
Seca3g06155 312 CDD Bbox1_BBX-like 5 47 - -
Seca3g06155 312 MobiDBLite consensus disorder prediction 259 277 - -
Seca3g06155 312 ProSiteProfiles Zinc finger B-box type profile. 76 123 IPR000315 GO:0008270
Seca3g06155 312 MobiDBLite consensus disorder prediction 239 256 - -
Seca3g06155 312 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 293 - -
Seca3g06155 312 MobiDBLite consensus disorder prediction 222 277 - -
Seca3g06155 312 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g06155 312 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06155 Seca-Chr3 129431660 129436346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06155 1 310 C2C2-CO-like Transcription Factor Family AT1G78600 44.729 2.04e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06155 - - gmx:100790959 457.218