Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06147 ATGAATTGGCTCATCATCATGAACGTGACTTCCCCTCCTCGATTGTTCCACCTTTGCTGGCTTCTTTGCTTTTATTTGGTCTCTTCTTTTGTTAGTGGAGCTACTCTGTTAAAAGAAGAAGTGCAAGCTCTGAAAGATATAGGTAAGACACTTGGGAATAAGGATTGGGACTTCAGCGTAGATCCATGCAGTGGACAGAGTAACTGGACATCATCTGTTCAAGTGAAAGGGAGCGAAAATGCTGTCAGCTGCAATTGCTCTTTTGCTAATGCCACAGTCTGCCATGTTGTTAGCATTGTTCTCAAGTCTCAAAATCTTACGGGCACACTCCCAAGTGAACTGGTGAAGTTGCCTTACCTCCAAGACATTGACCTCACGCGCAACTACCTTAATGGTACAATCCCTCCACAATGGGGCTCCATGAACCTTGTCAACATTTCCCTTCATGGAAACCGAATAACGGGTCCAATCCCAAAAGAACTAGGAAACATCACCACCCTGAAAAGTTTGGTCCTGGAGTTCAATCAATTATCTGGAAAAATTCCTCCAGAGCTTGGGAATCTTCCCCAGCTTGAAAGACTGCTTCTCACCTCCAACTATTTTGCTGGAAATTTACCTGCAACATTTGTTAAGCTCACTACGCTAAAGCACCTTCGACTCAGCGACAATCAATTCTCTGGAGCCATACCTAATTTCATTCAAAGCTGGACAAGTCTGGAGAGGCTGGTGATGCAAGGGAGTGGCTTGAGTGGCCCAATTCCTTTTGGAATTTCATTTCTAAAAAACCTCACTGACTTGAGAATTAGTGACCTGAAAGGAGCAGATTCTTATTTTCCGCAGCTTAATAACTTGACAAATTTGCAAACACTAGTACTGAGGAGCTGCAATCTTATAGGAACTGTTCCTGAATTTCTTGGAAATATGACTAATTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCGAACATCTTGGGTGGCCTAGAGAACATGAATATACTATATTTAACAGGAAACAATTTTACTGGACCACTTCCCAACTGGATAGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATCAATAACCCAGATCAGTTGACATGTCAACAGGGAACTGTGAACTTATTTGCATCATCTTTGAGGGGAAATAACTCGGGAATGGTTCCATGTTTGGGAAACACTAATTGTCCTAAAACTTGGTACTCTCTCCATATAAATTGTGGTGGAAAGCTCATAAATTCTAATGAAAGAACGACATATGATGATGATTCAAATGAAGCCGGGCCTGCAACATCTTACCGGACTGGATCAAACTGGGCAGTTAGCAACACAGGTCACTTCTTTGATAGCGGCCGCATAGACTACTATACCTGGTCTAATTCAACTAAGCTTGCTATGGACAATGGTGAACTGTATATGGATGCACGTGTGTCTCCCCTTTCTCTCACATATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCTGAGATAATGTTCAGTGATGATCAAACATATTCCAGCCTCGGAAGGCGTATCTTTGACATCTATATTCAGAGAAAGTTAGTGCTGAAGGATTTTAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAAAAGTTCACTGCTAGTGTGCCTAGTAATACCTTGGAGATCCGCTTTCATTGGGCCGGGAAAGGGACAACTGGTATCCCGTTTGGATCAGTACATGGTCCTCTTATATCAGCTATATCTGTTGATCCTGACTTTACACCCCCAGTGGAAAATGGAAGAAGCATACCTGTGCGGTCAATTGTTGCAATTGTAGTTGCTGGAGCACTTGTTATCATCATAGTATTTGGTATAGCTTGGTGGAGAGGATGTTTACGACAGAAAGGTTCATTAGAAAGAGAGCTAAGGGGTTTAGATTTGCAAACTGGCTTATTTACCTTACGGCAAATCAGAGCAGCAACTAACAACTTCGATATTGCCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTCAGATGGCACCATCATAGCAGTTAAACAGCTTTCTTCTAAATCAAATCAAGGGAATCGTGAATTTATAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCGTGTCTAGTTAAGCTCTATGGCTGTTGTATGGAGGGAGATCAATTGTTGTTGATTTATGAATACATGGAAAACAATAGCCTTGCTCGTGCTTTGTTTGCCCGGGAAAAAGGTCAATTGATGTTAGATTGGTCAACAAGGCAGAGGATTTGTGTTGGTATTGCTAGAGGTTTGGCCTACCTCCATGGAGAATCAAAGCTAAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATTATGATCTCAATCCAAAGATATCTGATTTTGGCTTGGCCAAACTTAAAGAAGAGGGTTATAGCCACATAACCACCCGAGTAGCTGGCACTTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACTGAGAAAGTAGATGTTTATAGTTTTGGAGTCGTTGCCTTGGAAGTTGTTAGTGGGAAGAGCAACACCATGAACTGGCCAAAGGAAGAATGCTTCTCTCTTGTTGATTGGGTGCATATCTTGAAAGAAGAAGGTAATATAATGGAACTAGTTGATGAGAGGTTGGGTGATGAGTTCAAAAAAGAGGAAGTAATGGTCATGATCAATGTAGCCCTTCTATGCACACAAGTTTCTCCAATGCAAAGGCCCACCATGTCCTCAGTGGTAAGCATGCTTGAAGGCAAAACTGTTGTTCAAGATGTGGTGCCAGACACAAACCAGGTGTTTGAAGGCAAGGAGGTGATCCAACAGTATTACCGGCAGAGAGAAAAAAATGAGACCCCTGAGTCTCAAGAAGAGAGCATGTCAATAGATGAAACTGCAGCATTTATGTCTGATACAGATCTATATTCTGTCAACAAGGATTCTTTTTATTGGGAGAAAAGTGATTAA 3039 0.414 MNWLIIMNVTSPPRLFHLCWLLCFYLVSSFVSGATLLKEEVQALKDIGKTLGNKDWDFSVDPCSGQSNWTSSVQVKGSENAVSCNCSFANATVCHVVSIVLKSQNLTGTLPSELVKLPYLQDIDLTRNYLNGTIPPQWGSMNLVNISLHGNRITGPIPKELGNITTLKSLVLEFNQLSGKIPPELGNLPQLERLLLTSNYFAGNLPATFVKLTTLKHLRLSDNQFSGAIPNFIQSWTSLERLVMQGSGLSGPIPFGISFLKNLTDLRISDLKGADSYFPQLNNLTNLQTLVLRSCNLIGTVPEFLGNMTNLRSLDLSFNKLSGQIPNILGGLENMNILYLTGNNFTGPLPNWIARPDYTDLSYNNLSINNPDQLTCQQGTVNLFASSLRGNNSGMVPCLGNTNCPKTWYSLHINCGGKLINSNERTTYDDDSNEAGPATSYRTGSNWAVSNTGHFFDSGRIDYYTWSNSTKLAMDNGELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFSDDQTYSSLGRRIFDIYIQRKLVLKDFNIAKEAGGVGKAIIKKFTASVPSNTLEIRFHWAGKGTTGIPFGSVHGPLISAISVDPDFTPPVENGRSIPVRSIVAIVVAGALVIIIVFGIAWWRGCLRQKGSLERELRGLDLQTGLFTLRQIRAATNNFDIAFKIGEGGFGPVYKGVLSDGTIIAVKQLSSKSNQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAREKGQLMLDWSTRQRICVGIARGLAYLHGESKLKIVHRDIKATNVLLDYDLNPKISDFGLAKLKEEGYSHITTRVAGTYGYMAPEYAMHGYLTEKVDVYSFGVVALEVVSGKSNTMNWPKEECFSLVDWVHILKEEGNIMELVDERLGDEFKKEEVMVMINVALLCTQVSPMQRPTMSSVVSMLEGKTVVQDVVPDTNQVFEGKEVIQQYYRQREKNETPESQEESMSIDETAAFMSDTDLYSVNKDSFYWEKSD. 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06147 1012 CDD STKc_IRAK 676 943 - -
Seca3g06147 1012 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Seca3g06147 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 598 - -
Seca3g06147 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 953 - -
Seca3g06147 1012 Pfam Protein kinase domain 675 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06147 1012 Gene3D Ribonuclease Inhibitor 274 405 IPR032675 -
Seca3g06147 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 40 199 - -
Seca3g06147 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 278 374 - -
Seca3g06147 1012 ProSiteProfiles Leucine-rich repeat profile. 310 332 IPR001611 GO:0005515
Seca3g06147 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 24 963 - -
Seca3g06147 1012 Gene3D - 408 597 - -
Seca3g06147 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 272 - -
Seca3g06147 1012 SUPERFAMILY Protein kinase-like (PK-like) 654 953 IPR011009 -
Seca3g06147 1012 Pfam Malectin domain 410 593 IPR021720 -
Seca3g06147 1012 SMART serkin_6 670 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06147 1012 Gene3D Ribonuclease Inhibitor 200 273 IPR032675 -
Seca3g06147 1012 SUPERFAMILY L domain-like 90 366 - -
Seca3g06147 1012 ProSiteProfiles Protein kinase domain profile. 670 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06147 1012 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515
Seca3g06147 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 745 - -
Seca3g06147 1012 Gene3D Transferase(Phosphotransferase) domain 1 746 957 - -
Seca3g06147 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Seca3g06147 1012 Gene3D Ribonuclease Inhibitor 36 199 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06147 Seca-Chr3 129191373 129203088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06147 27 948 Receptor kinase-like Gene Family AT1G53420 55.027 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06147 Pkinase 9.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06147 - - gmx:100786496 1639.78