Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06146 ATGGCTGATTCTGATCTATATGAGACTGCTCGTGTTTCCCCTATTTCTCTGACTTATTACGGATTTTGTCTAGAAAATGGAGAGTACACAGTTAAACTCTACTTTGCAGAGATAATGTTCACTGATGATGACACGTTTAGTAGCCTTGGGAGACGTATATTAATTATTTTTCTACAGGGAGAGCCAGTACATACGGATTTCAATATTGCAAATGAAGCCCAAGGAGTTGGAAAGGAAAAAATAATGCAATTTCCAGCTTATGTAAGTAATAATTCATTAGAGATCCGCTTCCATTGGGCTGGGAAAGGAACAAGAGCTATCCCATATCCATCAGTATATGGCCCTCTTGTATCAGCTATATCTGTCAGTCAAAGTGGTAATCAAACAGACTCTAGAGGTAGTGGCATATCTGCAGGGGCTATTGTTGGAATAGTGGTTGCAGCTGTTTTTATTGCCATCCTAGTTATACTTTGGTGGGGAGGTTGCATAGGAATAAAGAGTTCATTAACTAAAGAACTAAAGGACTTGGATCGACAAACTGGTTTATTCACCTTACGTCAAATCAAAACAGCAACAAATAACTTCAATATTTCCAATAAAATTGGAGAAGGTGGATTTGGTCCAGTTTATAAGGGAATTTTGTCAGATGGCACAATTATAGCAGTCAAGAAGCTTTCATCTAAATCAAAGCAAGGAAATCGTGAGTTCATAAATGAGATAGGCATGATTTCAGCTTTGCAACACCCTTGTCTCGTTAAACTTTATGGTTGTTGTGTTGAGGGAGATCAATTATTATTGGTATATGAATATATGAAAAACAATAGTCTTGCACACGCTTTATTTTGTCGTGAAGAATCTTGTTTAAAATTGAATTGGCCAACAAGGCACAAGATCTGTGTTGGTATTGCAAGAGGATTGGCTTTCTTGCATGAAGAATCGAGATTGAAAATTGTTCATAGGGATATTAAGGCCACTAATGTGTTGTTAGACAAAGACCTAAACCCAAAGATATCAGATTTTGGTTTGGCTAAGCTTGATGAGGAGGACAATACACATATAAGTACTCGAATAGCTGGGACCTATGGATATATGGCTCCAGAATATGCAATGCATGGTTATTTGACTGAAAAAGCATATGTATATAGTTTTGGAATTGTTGCCCTGGAAATCGTTAGTGGAAAGAGCAACACCATCCACCGGGCAAAGGAAAAATCTTTGTATCTTCTTGATTGGGCACATTTATTGAAAGAAAAAGGTAACCTAATGGAGCTAGTTGATCATAAGTTGGGTTTAAATTTCAATGAAGAGGAGGTATTGGTGATGATCAATGTTGCTCTTTTATGCACCAATGCCACTTCAAACCTTAGGCCTAGTATGTCATTAGTGGTAAGCATGCTTGAAGGCAAAATTGTGGTTCCAGAATTTGTTTCTGATCCAAATGAGGTAATGGATGAAATGAAGTTAGAGGCAATGCGACAACAAACACAAAGTCAAAATTTATTAATGGATGGGCCATGGACTGCTTCATCTTCATCAGCTGCAGATCTTTATCCCGTCGACATTGGTTCTTCCTATTGGGAGAGAAGAAATTGA 1593 0.3766 MADSDLYETARVSPISLTYYGFCLENGEYTVKLYFAEIMFTDDDTFSSLGRRILIIFLQGEPVHTDFNIANEAQGVGKEKIMQFPAYVSNNSLEIRFHWAGKGTRAIPYPSVYGPLVSAISVSQSGNQTDSRGSGISAGAIVGIVVAAVFIAILVILWWGGCIGIKSSLTKELKDLDRQTGLFTLRQIKTATNNFNISNKIGEGGFGPVYKGILSDGTIIAVKKLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMKNNSLAHALFCREESCLKLNWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKAYVYSFGIVALEIVSGKSNTIHRAKEKSLYLLDWAHLLKEKGNLMELVDHKLGLNFNEEEVLVMINVALLCTNATSNLRPSMSLVVSMLEGKIVVPEFVSDPNEVMDEMKLEAMRQQTQSQNLLMDGPWTASSSSAADLYPVDIGSSYWERRN. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06146 530 Gene3D - 1 126 - -
Seca3g06146 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Seca3g06146 530 ProSiteProfiles Protein kinase domain profile. 195 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06146 530 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 507 - -
Seca3g06146 530 FunFam Putative LRR receptor-like serine/threonine-protein kinase 271 478 - -
Seca3g06146 530 Pfam Protein tyrosine and serine/threonine kinase 196 465 IPR001245 GO:0004672|GO:0006468
Seca3g06146 530 Gene3D Phosphorylase Kinase; domain 1 163 270 - -
Seca3g06146 530 Gene3D Transferase(Phosphotransferase) domain 1 271 476 - -
Seca3g06146 530 SUPERFAMILY Protein kinase-like (PK-like) 178 491 IPR011009 -
Seca3g06146 530 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 164 270 - -
Seca3g06146 530 SMART serkin_6 195 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06146 530 CDD STKc_IRAK 201 468 - -
Seca3g06146 530 Pfam Malectin domain 2 120 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06146 Seca-Chr3 129165879 129170700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06146 7 512 Receptor kinase-like Gene Family AT1G53430 61.132 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06146 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06146 - - gmx:100785451 796.578