LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g06142	ATGATTCATTTCATTGTTTTTTCTCACTTTGCCAGTGACCTTACTCGTAACTACCTCAGTGGTACAATTCCTAGAGAATGGGGCTCCTCGAGTCTTCAAGAAATTTCTATGCTTGGAAACCGACTAACTGGTCCGATCCCAATAGAGTTAGCAAACCTCACCAATCTCACAGTTCTAATCCTAGAGTTCAATCAATTCACTGGAAATCTTCCTCCAGAACTTGGGAATCTTGCTCACCTTGAAAAACTGCATCTAAGCTCCAACAACTTTACTGGAGAATTGCCTGCAACTCTTGAGAGCATTACTACAATGAGAGAATTTCGAATTAGTGACAATCAGTTCTCTGGAATCATACCAGATTTTATTCAAAGACGGACAAGTCTTGATCAACTAGCCATTCAAGGGAGCGGTTTAAGTGGACCAATTCCTTCTGGAATTTCATTTTTGCAAAACTTAACAGACTTGAGGATTAGTGACTTGAATGGTTCTGATTCTACTTTTCCACGAGTTGATAATATGACAGGATTGAAAACATTGATATTAAGGAGTTGTAATATTAATGATACATTTCCTCAGTATTTAGCACACCTGAAAAGTTTGACAATCTTAGACCTCAGCTATAACAAATTAAGTGGGGTCATTCCAAGAAAGCTTGAAATGTTAACAAATGCAACCTATACATATTTAACAGGGAACTTTCTCACTGGACAAGTGCCTGAGTGGACAGATAGCAGTAAAAGAAACTTAGATCTTTCCTATAATAACTTCAGTGTTGAAAAAAATGAGCAAAAGATATGTTCTAAGCAAAATGTGAATTTGTTTGCAAGCTTTTCAAAGAATTCTTCAGGATCATTTTATTGCAAGAACAAAGATTGGGTCTGTACTAAAATCGTTAAATCTGTACATATAAATTGTGGTGGAAAACAGTCTGTCATAGAAGATATAACATATGACGAAGATACAAACCCAGCTGGACCAGCAGTGTATAAGCAGAGTGGAGACAACTACTGGGCTTTTAGCAACACTGGTCACTTCTTGGATAATAATACTGCAAAAAATCTTCCCTTTCTCCCCTACACCACAAAAAATGAGACTAGACTTTATATGAATGACATTGAATTATATAAGAATGCACGTATTTCCCCTATGTCTTTGAGTTATTATGGATTTTGCCTGGAAAATGGAAACTACACGGTTAAGCTCCACTTTGCTGAGATAATGTTCACTGATGATAACACATATAGCATCCTAGGGAGGCGTGTATTTGATGTCTACATTCAGATTCGTTTCTATTGGGCTGGCAAAGGGACATCATACATCCCATATAAATCAATAAACGGTCCTCTTATATCAGCTATATCTGTTGAGTATGACTCTACAAGTGGCAGCATATCTACAGGGTTTATTTTTGCAATTGCAGCTGCAGTAGTGATTGTTGTCATCTTGATTATTATCGTGATACTTTGGTGGGGAGGTTGTATAGGGAAAAGGCATTTATTAGTAAAAGAAAATGTAACAGGCTATATCTCTCATTATGGTTTGCTTCTATTAGCAGGGCTAAAGGATTTAGATCTTCATATTGGTTTATTTACCTTACGTCAAATAAAAGCAGCAACAAATAACTTCGATATTTCTAATAAGATCGGCGAAGGTGGCTTTGGTCCTGTTTATAAGGGCTTTCTGTCAAATGGCACAGTAATAGCAGTCAAACAACTTTCACCTAAATCAAAGCAAGGAAACCGTGAGTTCATAAATGAGATAGGCATGATCTCAACTTTGCAGCATCCTTATCTAGTTAAACTTTATGGTTGTTGTATCGAGGGAGATCAATTGTTGGTGGTATATGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTGGTCCAGAAGAATGTCATTTAAAATTGAATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTTCCTGCATGAAGAATCAAGACTGAAAGTTGTTCACAGGGACTTAAAGGCAGCTAATGTGTTGCTTGACAAAGATCTGAGCCCAAAGATATCTGATTTTGGTTTGGCGAAACTCAATGAGGAGGACAATACTCACATAAGCACGAGAATAGCTGGGACCTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTACTTGACTGAGAAAGCAGATGTCTATAGTTTTGGAATTATTTCCTTGGAACTTGCACGTCTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATCCAAGGTTGGGTGTCAATTTCAATGAAAATGAGGTAATAACGATTGTCAAAGTGGCCCTCCTATGCACCAATGCCAATTCAAATCTTAGGCCCTCCATGTCTTCAGTGCTAAGCATGCTTGAGGGCAGAACTGTGGTTCCAGAATTTGTTCCACATCCAAGTGAGGTAAGGGATGAGATTAAATTGGAAGCAATGAGAGAGTTTTACGGTCAGTTAGAAGGAAATAAAATAAGTGAGGCACAAAGTATGAGCATGACAACTAACTTACCATGGACTGCTTCATCTTCATCAACTACAGACCTCAATCCTTTCCATCTTGATGCTTCCCATTTGGAGGAAAAGAAATTAATAGAGTCTGTAACGTCCTAA	2625	0.3775	MIHFIVFSHFASDLTRNYLSGTIPREWGSSSLQEISMLGNRLTGPIPIELANLTNLTVLILEFNQFTGNLPPELGNLAHLEKLHLSSNNFTGELPATLESITTMREFRISDNQFSGIIPDFIQRRTSLDQLAIQGSGLSGPIPSGISFLQNLTDLRISDLNGSDSTFPRVDNMTGLKTLILRSCNINDTFPQYLAHLKSLTILDLSYNKLSGVIPRKLEMLTNATYTYLTGNFLTGQVPEWTDSSKRNLDLSYNNFSVEKNEQKICSKQNVNLFASFSKNSSGSFYCKNKDWVCTKIVKSVHINCGGKQSVIEDITYDEDTNPAGPAVYKQSGDNYWAFSNTGHFLDNNTAKNLPFLPYTTKNETRLYMNDIELYKNARISPMSLSYYGFCLENGNYTVKLHFAEIMFTDDNTYSILGRRVFDVYIQIRFYWAGKGTSYIPYKSINGPLISAISVEYDSTSGSISTGFIFAIAAAVVIVVILIIIVILWWGGCIGKRHLLVKENVTGYISHYGLLLLAGLKDLDLHIGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLSNGTVIAVKQLSPKSKQGNREFINEIGMISTLQHPYLVKLYGCCIEGDQLLVVYEYMENNSLAHALFGPEECHLKLNWPTRQKICVGIARGLAFLHEESRLKVVHRDLKAANVLLDKDLSPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIISLELARLLKEKGNLMELVDPRLGVNFNENEVITIVKVALLCTNANSNLRPSMSSVLSMLEGRTVVPEFVPHPSEVRDEIKLEAMREFYGQLEGNKISEAQSMSMTTNLPWTASSSSTTDLNPFHLDASHLEEKKLIESVTS.	875

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g06142	874	ProSiteProfiles	Protein kinase domain profile.	542	807	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g06142	874	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	618	739	-	-
	Seca3g06142	874	Pfam	Malectin domain	300	427	IPR021720	-
	Seca3g06142	874	SUPERFAMILY	Protein kinase-like (PK-like)	527	803	IPR011009	-
	Seca3g06142	874	SMART	serkin_6	542	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g06142	874	SUPERFAMILY	L domain-like	13	257	-	-
	Seca3g06142	874	Gene3D	-	299	456	-	-
	Seca3g06142	874	CDD	STKc_IRAK	548	794	-	-
	Seca3g06142	874	Gene3D	Ribonuclease Inhibitor	10	127	IPR032675	-
	Seca3g06142	874	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	13	829	-	-
	Seca3g06142	874	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	516	617	-	-
	Seca3g06142	874	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	664	676	IPR008271	GO:0004672\|GO:0006468
	Seca3g06142	874	Pfam	Protein tyrosine and serine/threonine kinase	544	791	IPR001245	GO:0004672\|GO:0006468
	Seca3g06142	874	Gene3D	Phosphorylase Kinase; domain 1	520	617	-	-
	Seca3g06142	874	FunFam	Leucine-rich repeat receptor protein kinase EMS1	9	97	-	-
	Seca3g06142	874	Pfam	Leucine rich repeat	175	232	IPR001611	GO:0005515
	Seca3g06142	874	FunFam	Leucine-rich repeat transmembrane protein kinase	98	300	-	-
	Seca3g06142	874	Gene3D	Ribonuclease Inhibitor	128	294	IPR032675	-
	Seca3g06142	874	Gene3D	Transferase(Phosphotransferase) domain 1	618	801	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g06142	Seca-Chr3	129060776	129068724	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g06142	13	838	Receptor kinase-like Gene Family	AT1G53420	49.719	0.0	839

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca3g06142		PK_Tyr_Ser-Thr	2.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g06142	-		-	gmx:100791136	1166.76