Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06137 ATGAATTTAAGTTCCCCTCATTTCTTCTTTCTCTTTCTCCTTGTTACCTCTTGCTTTGCCTCCTTAGCATTTGGAGGAGCCACCCTGTCACAAGATGAAGTGCAAGCTTTGAAAGATATAGGTAAGACACTTGGGAAGAATTGGGATTTTGGCGTAGATCCATGCAGTGGAGAACGTAACTGGAAATCCTCTGTTAGCGAAAATGCTGTCCTCTGCAATTGCTCCTTTGCCAATGGCACCATTTGTCACGTCACCAACATACTCTTGAAAGCACAAAATCTCCCCGGCACTCTCCCATCAGAACTGACCAGGTTACCTTACCTTCAAGAAATTGACCTTACTCGCAACTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGAATCTTGTCAATATCTCCCTCCTTGGAAATCGATTAACAGGTTCAATACCGGTGGAGATAACAAACATATCCACCCTCCAAAGTTTAGTCTTGGAGGCCAATCAACTATCAGGCAAACTTCCCCTTGAACTTGGGAATCTAACTCAAATTCAAAGATTGTTACTTTCCTCCAACAAATTTACGGGAGAACTACCTGTTACATTGGCGAAACTCACTACATTGCAAGATTTTCGAATTGGGGATAATCAATTCTTTGGGAAGATACCAGATTTTATTCAAAGCTGGACAAGTCTTAAGAAATTAGTCATTGAAGGGAGTGGATTAAGTGGACCAATTCCTTCTACAATTTCACTTCTGAAGAACTTAACTGACTTGAGAATTAGTAATTTGAATGGATCTGAATATTCACCTTTTCCACAACTCAATGGCATGGAATTAAAAAATTTGATTTTGAGGAATTGCAACATCAATGGAACACTACCGTCAGATCTTGCGACAATGACAAGTTTAAAAAACTTAGACCTCAGCTTTAACAAATTGACTGGGCCAATCCCAAATACCTATGATGCCTTAAGAAAAGTGGATTACATGATATCTTTCCGATTGTATATTATTAGATTAGATTATGATAAAATTTTATCACTTGTATATAGAGATATTTCATATAATAACTTCAGCATTGGAAGCAAAGGCAGTCAGACATGTCAAGATGGAAATGTGAACTTGTTTGCTAGCACGCACAATAATGAATCTATATTTTCTTTATTTTATTTTCTTACTTTGTTGAGTATTTCAATGGTTGCTCACTTTATTATACTTGTCCCAGCGTCATACTCTCTTCATATAAATTGTGGTGGAAAACTGATTACCGTCAATACGAGCACATATGATGATGATTCAGATGCAGCAGGACCAGCTAGATTCCAACACAGTGGAACAAAAAACTGGGCATTTAGCACCACTGGTAACTTCATGGATAAAGATGGTGGAAACTATTATACCTGGTCAAATAAATCTGAGCTTTCTATGACCAATGCTGAATTATACATGAATGCACGAGTGTCTCCCATCTCTTTAACTTATTATGGATTCTGCTTGGGGAATGGAAACTACACGGTAAATCTACATTTTGCAGAAATCATGTTCATTGGTGATCGAACATATAACAGCCTAGGAAGACGTGTATTTGATATCTACATTCAGGGAAAGTTGGTGCACAAGGACTTCAATATTGTAGAAGAAGCCGGAGGAGCTGGTAAAGTGATCACCAAACCATTCAATGTTGTTGTGACTAGTAATACCTTGGAAATCCGCTTATATTGGGCTGGAAAAGGGACAACCAGTATCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGAACCTGCAGACTTTACACCTCCTTCTGAAAACGGAAGCAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGTAGTAGTTGTTATTGTGTTGGTCTTTGGTATACTCTGGTGGAAAGGCTGTTTGGGGAAGAAAAACACTTTAGCAAGAGAGCTAAAGGGTTTAGAACTACAAACCGGTGTATTTACATTTAGACAGATCAAAATTGCAACAAACAACTTTGATATTGCCAATAAGATTGGAGAAGGGGGATTTGGTCCTGTGTACAAGGGATATCTACCAGATGGAACATTAATAGCAGTCAAGCAACTTTCTTCAAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAAATAGGCATGATTTCTGCTTTGCAGCACCCTTGTCTTGTTAAACTATATGGATGTTGTGTGGAGGGAGATCAACTATTGTTGATATATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGTAATTCTTTTGACCTTTTCAAACAAATAAAATTGGATTGGCCAACAAGGTACAAGATTTGTATTGGTATTGCTAGAGGTTTGGCACACCTCCATGAAGAATCAAGGCTAAAGGTTGTTCATAGGGACATCAAGGCTACTAATGTGTTGCTTGATAAAGATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGCTCGATGAAGAGGACAATACCCACATTAGCACTCGAATAGCTGGGACATATGGGTATATGGCTCCGGAATATGCCATGCATGGTTATTTGACAGATAAGGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATAATAAATGGAAGGAATAACACCATTCACCGACAAAAAGAAGAAGCATTCTATCTTCTTGATTGGGCACGTCTGTTGAAAGAGAAAGGTAATCTAATGGAGTTAGTTGATAAAAGATTGGGTTCAGAATTCAACAAAGAGGAGGTAATGGTGATGATCAACATGGCTCTCATATGCACTAATGTGACTCCAACACTTAGGCCTACCATGTCTTCAGTGGTAAGCATGCTAGAAGGTAGGATTGTTGTTCCAGAAGTGGTTTCAGAGACAAGTGAAGTATTGGATGAGAAGAAGTTAGAGGCAATGCGACAATTTTATCATGAGCAAAGTATTTCAATGGAAGGGCCGTGGACTGCTTCATCTACTTCTGCAACAGACCTTTATCCTGTACACTTGGATTCTGCTTATTTGGAGAAGAGAAATTAG 3024 0.3866 MNLSSPHFFFLFLLVTSCFASLAFGGATLSQDEVQALKDIGKTLGKNWDFGVDPCSGERNWKSSVSENAVLCNCSFANGTICHVTNILLKAQNLPGTLPSELTRLPYLQEIDLTRNYLNGTIPKEWGSMNLVNISLLGNRLTGSIPVEITNISTLQSLVLEANQLSGKLPLELGNLTQIQRLLLSSNKFTGELPVTLAKLTTLQDFRIGDNQFFGKIPDFIQSWTSLKKLVIEGSGLSGPIPSTISLLKNLTDLRISNLNGSEYSPFPQLNGMELKNLILRNCNINGTLPSDLATMTSLKNLDLSFNKLTGPIPNTYDALRKVDYMISFRLYIIRLDYDKILSLVYRDISYNNFSIGSKGSQTCQDGNVNLFASTHNNESIFSLFYFLTLLSISMVAHFIILVPASYSLHINCGGKLITVNTSTYDDDSDAAGPARFQHSGTKNWAFSTTGNFMDKDGGNYYTWSNKSELSMTNAELYMNARVSPISLTYYGFCLGNGNYTVNLHFAEIMFIGDRTYNSLGRRVFDIYIQGKLVHKDFNIVEEAGGAGKVITKPFNVVVTSNTLEIRLYWAGKGTTSIPFRSVYGPLISAISVEPADFTPPSENGSSISAGAVVGIVVAVVVVIVLVFGILWWKGCLGKKNTLARELKGLELQTGVFTFRQIKIATNNFDIANKIGEGGFGPVYKGYLPDGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPCLVKLYGCCVEGDQLLLIYEYMENNSLARALFGNSFDLFKQIKLDWPTRYKICIGIARGLAHLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIINGRNNTIHRQKEEAFYLLDWARLLKEKGNLMELVDKRLGSEFNKEEVMVMINMALICTNVTPTLRPTMSSVVSMLEGRIVVPEVVSETSEVLDEKKLEAMRQFYHEQSISMEGPWTASSTSATDLYPVHLDSAYLEKRN. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06137 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
Seca3g06137 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 406 596 - -
Seca3g06137 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 955 - -
Seca3g06137 1007 SMART serkin_6 669 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06137 1007 CDD STKc_IRAK 675 945 - -
Seca3g06137 1007 ProSiteProfiles Protein kinase domain profile. 669 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06137 1007 Pfam Malectin domain 408 591 IPR021720 -
Seca3g06137 1007 Gene3D - 405 596 - -
Seca3g06137 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 193 260 - -
Seca3g06137 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 978 - -
Seca3g06137 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Seca3g06137 1007 Gene3D Ribonuclease Inhibitor 195 268 IPR032675 -
Seca3g06137 1007 Gene3D Ribonuclease Inhibitor 33 194 IPR032675 -
Seca3g06137 1007 Gene3D Phosphorylase Kinase; domain 1 637 744 - -
Seca3g06137 1007 SUPERFAMILY L domain-like 74 321 - -
Seca3g06137 1007 Gene3D Transferase(Phosphotransferase) domain 1 745 958 - -
Seca3g06137 1007 Pfam Protein tyrosine and serine/threonine kinase 671 943 IPR001245 GO:0004672|GO:0006468
Seca3g06137 1007 Gene3D Ribonuclease Inhibitor 269 380 IPR032675 -
Seca3g06137 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 187 - -
Seca3g06137 1007 SUPERFAMILY Protein kinase-like (PK-like) 653 974 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06137 Seca-Chr3 128950085 128963603 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06137 27 992 Receptor kinase-like Gene Family AT1G53420 56.256 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06137 PK_Tyr_Ser-Thr 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06137 - - gmx:732563 1449.49