Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06135 ATGTGGTTTGTGATTTCAAGCTTCAAACGCGTATCTGTGTTCTTCTATGTGTTCCTCGCTTTGAATTGCTTCCGAGAGTTTGGATCCAACGCTCAACTCATACCACAAGATGAAGTGAAATTACTACAAACAATATCAGACAAGTTAGAGAACTTGAATTGGAAAGTTACAGAACGTTCCTGCAGAGGAGATAATGGATTTGGTAACCAGGATATCTCAGGGGATCAAATCACAAGGAATGTCACGTGTGATTGCTCTTTCAACGCTAGAACCATTTGCCATGTGAAATTCATCTTGCTCAAGGGCCTCAATATATCCGGAGTTATGCCCAGCGAATTTGGAAATCTTACTCAACTGAAAATACTTGATCTCACTCGGAATTATATAAACGGCTCAATTCCAAAAAGTCTTGGACGCCTCTCTCTTGTGACACTGTCACTTTTGGGAAATCGACTTAGTGGTCCAATTCCCTCAGAAATCGGTGATATTGCTAGTTTGCAAGAACTGAACTTAGAAGATAATCAACTTGGAGGACCACTTCCTCCCAGCCTTGGAAATTTAAGAAGCTTACTGAGATTATTGCTTTCTGCAAATAACTTTACAGGGACAATACCAGAGACATTAGGCAATCTAAACAATCTCACTCAGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAGATACCCAATTTTATTGGGAACTGGAGCAAACTTGAAAGATTGGATTTGCAGGGCACATCCTTGGAAGGCCCAATTCCTCCTGCCATATCTAGCTTGACTAATCTGAAGGAATTGAGAATATCTGATTTGACTGGACCAACTATGACATTTCCTGATCTGAAGAATATGAAACGAATGCAAAGACTGGAATTGAGGAATTGCTTAATCACCGGTCCCATTCCAGGCTATATTGGACAAATGGAAAATTTAAAAACACTAGATCTGAGCTCCAACAGGTTGACTGGTCCAATCCCAGATTCACTTGAGGACTTGGACTCAATAAATTTCATGTTTCTGAGTAACAACTCTCTGAATGGATCAATTCCTGGATGGATACTGAACAACAAGCAGAATATTGATTTATCTTTGAACAATTTTACAGAGTCTTCTGCATCTAATTGCCAGCTCTTGGATGTGAACTTAGCTTCTAGCAACTCTCCTTCAGCAAGCACTTCGTTGTCTTGTTTGAAGAAGGGCCTACCTTGTTCAGGAAAACAACAGTTTCACTCACTATTCATAAACTGTGGAGGACCTGCAGTGGAGTCTGAGGGTAATGAATATGAAGCTGACACCAATCTACGTGGCATTTCAAACTTTGTTACTAGTAATGATGGCAAATGGGCTTATAGCAGCACTGGAGTATATCTAGGAAATGAAAAAGCTGATTATGTAGCAACAAATGTGTTCTCTTTGAATATTAGTGGCCCTGAATACTACCAAACAGCCCGCATTTCCCCTCTGTCTCTTAATTACTATGGCCTTTGTATGCTGAAGGGAAATTATAATGTGAAGCTTCATTTTGCTGAGATAATGTTTTCTGATGACAAGACATTCAGCAGCCTTGGAAGGCGTATATTTGATGTTTCAATTCAAGGTGTTAAACATTTGAAAGATTTTAACATTGTGAAAGAAGCTAATGGAGTTGGCAAGGGAATCATTAGGGAGTTTAATGTTGATGTTAATGATAGCACCCTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTATGAGAGGTGTATATGGACCTCTTATATCTGCCATCACTGTGACCCCAAACTTTAAAATTCCTTCAAACGGGCTGTCTACTGGAGCAATTGTTGGAATTGTGGTTGGATCATGCGTGTTTGTCATACTGATACTCTTTGTCCTTTGGAAGATGGGTTTCCTTGGAGGGAAAGATCCAACAGACAAAGAACTTCTAGATCTGAAAACGGGCTATTTCAGTTTGAGGCAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAATAAAATAGGTGAAGGAGGCTTCGGGCCAGTATACAAGGGTGTATTGTCAGATGGTGCAACGATTGCTGTCAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAACCGTGAATTCGTTACTGAAATAGGAATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAATTGCTGCTTATATATGAATATATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAAGAACAAAGGTTGCACTTGGACTGGCCCACAAGAATGAAGATTTGTGTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGGGATATTAAGGCAACCAATGTCTTACTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACTCATATCAGCACACGAATAGCTGGGACAATTGGCTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGGGTTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACCAATTACAGGCCAAAGGAGGAGTTTGTTTATCTTCTGGATTGGGCCTACGTTCTCCAAGAGCAAGGAAATCTTCTGGAATTGGTTGATCCAAGTCTTGGTTCAAACTACTCCCCAGAAGAGGCCATGAGAATGCTGCAGTTGGCACTGCTCTGCACCAATCCATCTCCCACTCTTAGGCCACCCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCAATTCAAGCACCAATAATCAAACGCAGTGAAAATGCACAAGATGCAAGATTTAAAGCCTTTGAGATACTATCACAAGACAGCCAAACTCAAGTTTCTTCTACATTCTTACAAGATAGTGTAGAGCAAAGCAGGAAATCAATGGATGGGCCTTGGATTGACTCCTCCATATCTCTTCCAAGTAGAGACGATTATTCTTCATCCAATAAACTTATTCGAGGTTCGAATGATGTGTGA 3054 0.4073 MWFVISSFKRVSVFFYVFLALNCFREFGSNAQLIPQDEVKLLQTISDKLENLNWKVTERSCRGDNGFGNQDISGDQITRNVTCDCSFNARTICHVKFILLKGLNISGVMPSEFGNLTQLKILDLTRNYINGSIPKSLGRLSLVTLSLLGNRLSGPIPSEIGDIASLQELNLEDNQLGGPLPPSLGNLRSLLRLLLSANNFTGTIPETLGNLNNLTQFRIDGSSLSGKIPNFIGNWSKLERLDLQGTSLEGPIPPAISSLTNLKELRISDLTGPTMTFPDLKNMKRMQRLELRNCLITGPIPGYIGQMENLKTLDLSSNRLTGPIPDSLEDLDSINFMFLSNNSLNGSIPGWILNNKQNIDLSLNNFTESSASNCQLLDVNLASSNSPSASTSLSCLKKGLPCSGKQQFHSLFINCGGPAVESEGNEYEADTNLRGISNFVTSNDGKWAYSSTGVYLGNEKADYVATNVFSLNISGPEYYQTARISPLSLNYYGLCMLKGNYNVKLHFAEIMFSDDKTFSSLGRRIFDVSIQGVKHLKDFNIVKEANGVGKGIIREFNVDVNDSTLEIHLSWAGKGTNAIPMRGVYGPLISAITVTPNFKIPSNGLSTGAIVGIVVGSCVFVILILFVLWKMGFLGGKDPTDKELLDLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGATIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKEEQRLHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSPEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPIIKRSENAQDARFKAFEILSQDSQTQVSSTFLQDSVEQSRKSMDGPWIDSSISLPSRDDYSSSNKLIRGSNDV. 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06135 1017 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06135 1017 Pfam Malectin domain 411 592 IPR021720 -
Seca3g06135 1017 SMART serkin_6 664 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06135 1017 Gene3D Ribonuclease Inhibitor 197 411 IPR032675 -
Seca3g06135 1017 Gene3D Phosphorylase Kinase; domain 1 636 739 - -
Seca3g06135 1017 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 271 - -
Seca3g06135 1017 Pfam Protein tyrosine and serine/threonine kinase 668 934 IPR001245 GO:0004672|GO:0006468
Seca3g06135 1017 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Seca3g06135 1017 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 272 395 - -
Seca3g06135 1017 ProSiteProfiles Leucine-rich repeat profile. 309 332 IPR001611 GO:0005515
Seca3g06135 1017 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 215 IPR000225 GO:0005515
Seca3g06135 1017 Gene3D Transferase(Phosphotransferase) domain 1 740 958 - -
Seca3g06135 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Seca3g06135 1017 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 967 - -
Seca3g06135 1017 SUPERFAMILY L domain-like 83 371 - -
Seca3g06135 1017 Gene3D Ribonuclease Inhibitor 41 196 IPR032675 -
Seca3g06135 1017 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 38 203 - -
Seca3g06135 1017 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515
Seca3g06135 1017 Gene3D - 412 597 - -
Seca3g06135 1017 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 739 - -
Seca3g06135 1017 SUPERFAMILY Protein kinase-like (PK-like) 648 936 IPR011009 -
Seca3g06135 1017 CDD STKc_IRAK 670 937 - -
Seca3g06135 1017 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Seca3g06135 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06135 Seca-Chr3 128845943 128857271 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06135 1 1002 Receptor kinase-like Gene Family AT1G53440 63.609 0.0 1286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06135 PK_Tyr_Ser-Thr 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06135 - - gmx:121173337 1601.65