Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06134 ATGGCAAGAGACAGAGCCACCGCACTCGCTGGGTCCAACAACCCTTCACCCCCAAACGCCAAGGAGATCCGTTACAGAGGCGTCAGGAAGCGTCCATGGGGACATTACGCCGCTGAGATTCGCGATCCCGGGAAGAAAACCCGTGTCTGGCTCGGCACCTTCGACACCGCTGAAGAGGCGGCGAGGGCTTATGACACGGCGGCGCATGAGTTCCGCGACGCCAAGGCTAAGACCAATTTTCCCACCCCATCTTAG 255 0.6 MARDRATALAGSNNPSPPNAKEIRYRGVRKRPWGHYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAHEFRDAKAKTNFPTPS. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06134 84 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 82 - -
Seca3g06134 84 SMART rav1_2 24 84 IPR001471 GO:0003700|GO:0006355
Seca3g06134 84 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca3g06134 84 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g06134 84 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Seca3g06134 84 Pfam AP2 domain 24 72 IPR001471 GO:0003700|GO:0006355
Seca3g06134 84 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Seca3g06134 84 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Seca3g06134 84 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Seca3g06134 84 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Seca3g06134 84 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06134 Seca-Chr3 128794250 128794504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06134 19 82 AP2-EREBP Transcription Factor Family AT3G15210 93.750 9.88e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g06134 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06134 K09286 - gmx:100500601 134.42