Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06123 ATGACGTCGGGGACGAGGCAGCCAACATGGAAGGAGCGAGAGAACAACAAGAGGAGAGAGAGGAGGAGAAGAGCCATAGCGGCGAAGATCTTCGCTGGTCTGAGAATGTACGGTAACTATAAGCTTCCCAAGCACTGCGACAACAACGAAGTCCTCAAGGCTCTCTGCAACGAAGCTGGTTGGATCGTTGAACCGGATGGAACCACGTATCGCAAGCATGTGTGGTTTGATTTTGATTATTGCAGCGCCATGGCACATGCTACTGATGCTGGCATTGACGCTCGGAATCAAAAGGACGTGAAAGGGGCAGAGAGAGTTACAGGGGGGGTGTTAGCTGTTACCCTATAG 348 0.5172 MTSGTRQPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKHVWFDFDYCSAMAHATDAGIDARNQKDVKGAERVTGGVLAVTL. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06123 115 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 72 IPR033264 GO:0003700|GO:0006351|GO:0009742
Seca3g06123 115 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g06123 115 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 73 IPR008540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06123 Seca-Chr3 128547030 128547640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06123 1 72 BZR Transcription Factor Family AT1G78700 94.444 8.78e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Seca3g06123 BES1_N 2.9e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06123 - - thj:104812311 124.405