Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06117 ATGGATGAATTTTGTGAAGGTTCATGTGTTAACCTTGATGACGATAATATAGATATTAATGTTACTGGTGATGAATTTGATGTAAACCATAGTGAAGATGAAAATGATTCGGGTGGTCCTAGTGTGGAGGAAGAGTTAGGTAGAATGGATCATAGAGGTAAAAGAATGGAAGATTTGACTCCTGTTGATATTCGAAACATGGAGTTTGCTAGTGAAGAGCATGGTGAGATATTTTATAGGGCATATGCAAAGCGTCATGGATTTGTTGTTAGAAAGGATGAGATTAATCGGGACATTAAGGGCAATGTTATTATGCGTCAGTTTGTTTGCAACAAAGAGGGTAGTAGGAACAAAAAACATTTGATGAGGGTGGATAGCAAAAAAGAACATAGGCCATTAACACGTCTGGATTGTCAAGCTAACCTACGAATTCGCTTAGATTATAAGACATCTAAATGGAAAGTGGTTTCTTTTGTGGAGACCCACAATCATGAGCTTACCCCTTCTACTTTTGTGCACTTACTACCTGGTAATAGAGGGTTGAATAATGCTGATAAAGCCCAAGTAGGGAGGTTGCATGTAACACCCGTGTTTTTACTGTTTTATTGTATTGTGTGA 618 0.377 MDEFCEGSCVNLDDDNIDINVTGDEFDVNHSEDENDSGGPSVEEELGRMDHRGKRMEDLTPVDIRNMEFASEEHGEIFYRAYAKRHGFVVRKDEINRDIKGNVIMRQFVCNKEGSRNKKHLMRVDSKKEHRPLTRLDCQANLRIRLDYKTSKWKVVSFVETHNHELTPSTFVHLLPGNRGLNNADKAQVGRLHVTPVFLLFYCIV. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06117 205 MobiDBLite consensus disorder prediction 26 53 - -
Seca3g06117 205 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Seca3g06117 205 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06117 Seca-Chr3 128367047 128367664 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g06117 FAR1 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06117 - - ccaj:109792835 184.496