Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06110 ATGGAGAATCGTCATCCTTCAGATGACAGAAAGGCTTTGGAACAAGAGCTAGCCAGAGGACATGACATGGCAAACCAATTACTTGAAATACTTGTTCATAAATCAAATACTCACCAAGGAGATGTTGAAGGGTTAATGTTACCCTTTGCCAAAGATCTTGTGTATAAGGTACTAACATCGTTCACAAATACCCTTTTGCTCTTGAAGAGCGATAGTGATGATGTCTCCGGTGAGGAAGTTTTGCCTAATTTCTCTTCGTCCGCACCAAAGCCTGAGGATACAGATGAGGCTTGCAAGAGTTTCATGAACGCTAAAAATCGAAGAGGCTGCTACAAAAGAAAATTAAATGCACTAACTTGGGAGAGGGATAGCTCAACTCTGATTGAAGATGGGTATGCATGGAGAAAGTATGGGCAAAAAAGGATAATGAATACGAAATACCTCAGGTATATATTCTTCAATTTCAAATTATATATATATCTTCTCTCAAAATTCACTTTCTCTCTAATGATTATTCAACATGATTCAAATAATGAATGTGTGTAG 546 0.3755 MENRHPSDDRKALEQELARGHDMANQLLEILVHKSNTHQGDVEGLMLPFAKDLVYKVLTSFTNTLLLLKSDSDDVSGEEVLPNFSSSAPKPEDTDEACKSFMNAKNRRGCYKRKLNALTWERDSSTLIEDGYAWRKYGQKRIMNTKYLRYIFFNFKLYIYLLSKFTFSLMIIQHDSNNECV. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06110 181 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 150 IPR044810 GO:0003700
Seca3g06110 181 SUPERFAMILY WRKY DNA-binding domain 124 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06110 181 ProSiteProfiles WRKY domain profile. 123 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06110 181 Gene3D WRKY domain 113 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06110 181 SMART WRKY_cls 128 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06110 181 Pfam WRKY DNA -binding domain 129 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06110 Seca-Chr3 128056934 128058668 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06110 16 152 WRKY Transcription Factor Family AT3G56400 36.364 7.10e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g06110 WRKY 7.1e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06110 - - tpra:123894900 169.088