Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06108 ATGAAGAATCAGCAGCATTCAGGTAGAAAAGCAATGGAACAAGAGCTAATCGAAGGGCGTGACACAGCAAGCCAGTTACTTGAAATACTTGTTCATAAATCAAATAATCCTCATGGAGATCTAGAAGAAGGAATAATATTATTACCTTTTGCTAGAGATCTTGTGCGCAGGGTACTAAGATCGTTCACAAATACCCTTTTGCTCTTGAAAACCAATAGTGATGTCTCCCATGAGGAGGTTAAGGTTTTGCCTACTACTATTACAAATGTCTCTTCATCTGCAAGTTGTCCAAAGCCTGAAGATAAAGATGAGGCTTCCAGGAGTTTTACAGATGCTAAAAATCGAAGGGGCTGCTACAAAAGAAAAAGATCAAATGCAGTAAGGGAGAAGGATAGCTCAATTTTGACTGAAGATGGATATGCATGGAGAAAGTACGGACAAAAAAAGATAATGAATACAAAATACCTCCGGAGCTATTATAGATGCACTCACAAAGATGATCAGAATTGTCCAGCAACCAAAAAGGTGCAGAGAATTCAAGAGGACCCTCCATTGTATCGGACAACTTATTATGGTCATCACAATTGTAAAAGCTCTTTGATTAATCTAGAGGTGATAAAAGAACTTGATACTTCTTCTTCTAGTTCTTCTATATTCCTTAACTTCAATAACAGCAGCCTCCCAAACAAAGAAGCATACCCGTTTTTATCTTCACTTTTTCCATCCACGAAACAAGAGCCTATGGAATTGATTTGTGATTATCATAGTGGTCACAACCAGCTAACTTCATCAGATTATAACCTCCTGTTATGTGACTATGAAACTGTTTCAATTATTTGA 840 0.3738 MKNQQHSGRKAMEQELIEGRDTASQLLEILVHKSNNPHGDLEEGIILLPFARDLVRRVLRSFTNTLLLLKTNSDVSHEEVKVLPTTITNVSSSASCPKPEDKDEASRSFTDAKNRRGCYKRKRSNAVREKDSSILTEDGYAWRKYGQKKIMNTKYLRSYYRCTHKDDQNCPATKKVQRIQEDPPLYRTTYYGHHNCKSSLINLEVIKELDTSSSSSSIFLNFNNSSLPNKEAYPFLSSLFPSTKQEPMELICDYHSGHNQLTSSDYNLLLCDYETVSII. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06108 279 SUPERFAMILY WRKY DNA-binding domain 133 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06108 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 216 IPR044810 GO:0003700
Seca3g06108 279 MobiDBLite consensus disorder prediction 89 109 - -
Seca3g06108 279 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06108 279 ProSiteProfiles WRKY domain profile. 131 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06108 279 Gene3D WRKY domain 104 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06108 279 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06108 Seca-Chr3 128017383 128019305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06108 10 198 WRKY Transcription Factor Family AT3G56400 38.542 6.88e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g06108 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06108 - - gmx:102663141 313.153