Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06107 ATGGAGAATCAGCAGCAGCCGTCAGATGCCAAAAAGGCAATGGAACAAGAGCTAATAAGAGGGCGTGAGACAGCAAACCAGTTACTTGATATACTTGTTCATAAATCAAATACTCATCATCATCATGGAGATCTAGAAGATTTAATGTTATTATCTTTTGCTCAAGATCTTGTTCGCAAGGTACTAAGATCGTTCACAAATACCCTTTTGCTCTTCAATACCAATAGTAATGTCCCCGAAGAGGAGGTTAAGGTTTTGCCTATTACTCCTAAGGATACAGCAGATGAGGCTTGCAAGAGTTTCATCATGAACGCTAAAAATCGAAGAGGCTGCTACAAAAGAAAATCAAATGCACTAACATGGGAGAAGGATAGCTCAATTCTAACTGAAGATGGCTATGCATGGAGAAAGTATGGGCAAAAAATGATCATGAAGAAATACATCAGGAGCTATTACAGATGCACTCACAAAGATGATCAGAATTGTCAAGCTATCAAACAAGTGCAGAGAATTCAAGATGACCCTCCATTGTACCGGACAACTTATTATGGCCATCACAATTGCAGAAGCTCTTTGATAAATTCAGAGGTGATCAAGGAACTTGATACTACTTGTTCTTCTAGTTCTTCAGTATTCCTTAACTTCAATAACAACCTCTGA 660 0.3848 MENQQQPSDAKKAMEQELIRGRETANQLLDILVHKSNTHHHHGDLEDLMLLSFAQDLVRKVLRSFTNTLLLFNTNSNVPEEEVKVLPITPKDTADEACKSFIMNAKNRRGCYKRKSNALTWEKDSSILTEDGYAWRKYGQKMIMKKYIRSYYRCTHKDDQNCQAIKQVQRIQDDPPLYRTTYYGHHNCRSSLINSEVIKELDTTCSSSSSVFLNFNNNL. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06107 219 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06107 219 ProSiteProfiles WRKY domain profile. 124 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06107 219 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06107 219 SMART WRKY_cls 129 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06107 219 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 196 IPR044810 GO:0003700
Seca3g06107 219 Gene3D WRKY domain 102 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06107 Seca-Chr3 127976564 127978206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06107 12 214 WRKY Transcription Factor Family AT3G56400 32.394 1.08e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g06107 WRKY 8.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06107 - - gmx:102659367 232.261