Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06104 ATGAGAGGACGTGAAAAGGCAAATCAGTTACTTGAAGTACTTACTGATAAATCGAAGGAAAGGTCAAAATCAGAGGTACCATTGGGTGTTGCTGAACCTCTCGTGCGCGAAGTACTGAGATCATTCACGAACACGCTTTTGCTCTTGAGCGCCAACGATGAGTACCCCAAAAAGGTGGAACCGCCTATCACTAGAACTAGAATCGGTAAAAATGGAAGAGGGTCGTCCAAGAGAAAATCAACTGTGCCAACTTGGAAGAAAGACAGCTCAGTACTGATTGAAGATGGCCATGCATGGAGAAAGTATGGACAAAAAAAGACAATGAATTCCAAATACCTCAGGAGCTACTATAGGTGCACTCACAAGTATGATCAGGGGTGCCAAGCAATCAAACATGTTCAGAGAATTCAAGAGGACCCTCCATTGTACCGGACAAGTTATTATGATCATCACACTTGCAAAAGCTCTTATAATAATTCTGAGATAATTTTGGAACCTGATTCTTCCATATTACTTAGCTTCAATAACCACCTTCCAAGCAAAAAAGAAGATCCATCATTTTCATCAGCACTTTTCGCATCAACAAAACAGGAGCCTATGGAAGTGATACACAATGACCATATTGCTCTAAACCAATTGTCCTTGTCAGAGAACCTCCTATTATGCGATTATGAAATTTATTCCAATTATTTAAGGCATGCGCATGTCACTATGCTATCGTCGACCGAATATGTTGAATGTGACAATATGTATGACCGGTTTGGATCTTGA 771 0.4047 MRGREKANQLLEVLTDKSKERSKSEVPLGVAEPLVREVLRSFTNTLLLLSANDEYPKKVEPPITRTRIGKNGRGSSKRKSTVPTWKKDSSVLIEDGHAWRKYGQKKTMNSKYLRSYYRCTHKYDQGCQAIKHVQRIQEDPPLYRTSYYDHHTCKSSYNNSEIILEPDSSILLSFNNHLPSKKEDPSFSSALFASTKQEPMEVIHNDHIALNQLSLSENLLLCDYEIYSNYLRHAHVTMLSSTEYVECDNMYDRFGS. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06104 256 SMART WRKY_cls 93 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06104 256 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 31 183 IPR044810 GO:0003700
Seca3g06104 256 ProSiteProfiles WRKY domain profile. 88 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06104 256 SUPERFAMILY WRKY DNA-binding domain 89 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06104 256 Gene3D WRKY domain 78 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06104 256 Pfam WRKY DNA -binding domain 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06104 Seca-Chr3 127924172 127934676 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06104 1 154 WRKY Transcription Factor Family AT5G01900 35.714 5.27e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g06104 WRKY 2.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06104 - - gmx:100792193 272.707