Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06103 ATGAAAGACAACTCAGTACTGATCGAAGATGGCCATGCATGGAGAAAGTATGGACAAAAAAAGAAAACGAATTCCAAATACCTCGGGAGCTACTACAGATGCACTCACAAGCATGATCAGGGTTGCCAAGCAATATTGAAACATGCATGTTCAGAGAATTCAAGAGGACCCTCCATTTGTACCGAACAAGTTATTATGATCATCACACATGCAAAAACTCTTATAATAATTCTGAGATAA 240 0.3833 MKDNSVLIEDGHAWRKYGQKKKTNSKYLGSYYRCTHKHDQGCQAILKHACSENSRGPSICTEQVIMIITHAKTLIIILR. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06103 79 SUPERFAMILY WRKY DNA-binding domain 4 49 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06103 79 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 45 IPR044810 GO:0003700
Seca3g06103 79 Pfam WRKY DNA -binding domain 9 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06103 79 SMART WRKY_cls 8 72 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g06103 79 Gene3D WRKY domain 1 70 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g06103 79 ProSiteProfiles WRKY domain profile. 3 44 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06103 Seca-Chr3 127903535 127907511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06103 5 57 WRKY Transcription Factor Family AT3G56400 39.437 3.30e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g06103 WRKY 2.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06103 - - var:108332714 80.4925