Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06077 ATGGCAAAAGAATTTTGGGACTCCAACAACACTCATCATAGTAATGGATCAGAGGATTACATGAATGGCTTCCCCTGGCCACCAAGATCATATACTTGTAGCTTCTGCAGGAAGGAATTCAAATCTGCTCAAGCACTTGGTGGTCACATGAATAGATGGGTTGTTGTGGATGGTATCTTAGTGAACCCTTTAAGCAAAAAGTCCAATATTAATGCAGAATCTTTGTCTGGGATTGGAGAACATGAAGATGGGCGTAAGATGATGAAGAAGGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTTATTCTTAG 357 0.4118 MAKEFWDSNNTHHSNGSEDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNRWVVVDGILVNPLSKKSNINAESLSGIGEHEDGRKMMKKGEILRMDLEIGLPRDYDLDLELRLGTYS. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06077 118 Pfam C2H2-type zinc finger 31 50 - -
Seca3g06077 118 PANTHER OS07G0101800 PROTEIN 6 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06077 Seca-Chr3 127310647 127311219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06077 6 51 C2H2 Transcription Factor Family AT3G23130 60.870 2.27e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g06077 zf-C2H2_6 3.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06077 - - var:108333719 96.6709