Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06071 ATGTCGTTGAGGAAGGTCTTTCGCTCTCGTAAATTCTCCAGATCCTTCAAGGAAGTCCAGGCCCTTGACACCGCCGACGACGGCAACCGCCTCGACGCCGCCGGCGACGAAGGCAATGCGTGGTCCAACTTGCTGCCGGAACTTCTCGGGGAGATTATTCGCCGGGTCGACACCGCCGAGGACCAGTGGCCCCACCGCCAAAACGTCGTCTCTTGCGCCTGCGTTTGCAAGCGATGGAGGGACATGACCCGCGAGATCGTAAGGTCTCCTTCTCACAAGGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGACCAACCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACATTTTACCTCTATCTTGCCCTTACACCATGCCTCTTTTTCCCCCTGTTTCCTTCCCATCCATCACCAGCATTCACAGACAAAGGGAAGTTTCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCGTATGTTGGAAAGTTGAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCGCCCCATAGCGGTGCCAAACCATCAAGTGGCAGGGCCAGCCGTCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTGAAGTGTCCTGTGACTCCTGTCTCATCAACGGGTGCAAGTTCAGATAGCATGTCTCCAGATGGCCATAAAATGGATGATAAAGAACATGCTACTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGATCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCTCCAATTTGGTAAAGTAGCAGATGATACTTTTACCATGGATTATAGGCAACCCTTATCTGCTTTCCAGGCGTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1161 0.4944 MSLRKVFRSRKFSRSFKEVQALDTADDGNRLDAAGDEGNAWSNLLPELLGEIIRRVDTAEDQWPHRQNVVSCACVCKRWRDMTREIVRSPSHKGKITFPSCLKQPGPRDQPHQCLIKRNKKTSTFYLYLALTPCLFFPLFPSHPSPAFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVTPVSSTGASSDSMSPDGHKMDDKEHATSGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06071 386 SUPERFAMILY F-box domain 39 84 IPR036047 GO:0005515
Seca3g06071 386 SUPERFAMILY Tubby C-terminal domain-like 90 386 IPR025659 -
Seca3g06071 386 Gene3D - 36 91 - -
Seca3g06071 386 Pfam Tub family 102 381 IPR000007 -
Seca3g06071 386 PANTHER TUBBY-RELATED 12 384 - -
Seca3g06071 386 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Seca3g06071 386 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Seca3g06071 386 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Seca3g06071 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Seca3g06071 386 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Seca3g06071 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Seca3g06071 386 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Seca3g06071 386 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Seca3g06071 386 CDD F-box_AtTLP-like 41 85 - -
Seca3g06071 386 Pfam F-box domain 41 88 IPR001810 GO:0005515
Seca3g06071 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Seca3g06071 386 Gene3D Tubby Protein; Chain A 97 386 IPR025659 -
Seca3g06071 386 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06071 Seca-Chr3 127118528 127124103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06071 1 386 TUB Transcription Factor Family AT1G53320 71.320 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca3g06071 Tub 3.2e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06071 K19600 - gmx:100808096 657.521