Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06044 ATGTCGCATTCGTCGGGAAAACCCGTTTCTGAAGTCGTCGGGTTAGACACTTTCACCGATCGGTTCCGAGACACGTTGAACTGCGAAGCTAACAAACCGGACTTCCGAGAACTCGATCTGGGTTCACCCGTTTCGCCATTGCGGACCCGTGGACCCGCCGCGAGTAGCAGTTCTGGATCCTCTGGATCAGTCTCTGCAGGGCGAAACGGGCAAAACCCGGTTCCCAAAAGATCCGATTCAACAACCAACAACAATACGAACAACTCCGGCGAGCTTTCCGGCTCCAGTGAGAACAGCCCCACCGCCGCGGCGGAGAGCCAGCGATCCGCCGGGAATAATGCGCGGGGCTTCAAACCGGGTCACGTGAGATCCGATTCTGGATCCGCCCCGATGCCGTTAATCTATTCGGGTCAGACAGTGAACTCGCCGGCTCTTAATGTTCTTCCCACCGGAAACATTTGCCCCTCCGGTAGGATCATCAAGACCGGCATGGCGGCGAATCGGGGCTCCCGGAGCGACGTTCTCGGCTCCGGGACGGGGAACTACGGTCACGGCAGCATAATGCGCGGCGGTTCCGCCGCCGCTGCCAAAGGAGACACGGCGAATGTGAGGTGCAGCATTGGCAATGATAAGAGAGGAGTGCAGAGTGTGGATCCAGAAGAGCTAAAGAGAGCAGGGAATGAGCATTATAAGAAGGGTCACTTTGCAGATGCATTGAGTCTTTATGACCGTGCAATTGCGTTGTCGCCGGCCAGTGCCGCCTACCGGAGCAACCGTGCGGCGGCGCTGACTGGGTTAGGACGGCTGGCGGAGGCGGTGAGGGAATGTGAGGAGGCTGTTAGGTTAGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTCTGTTATCATGGGCTGCAGCCGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATTAGCAAATGTGCAGATTTCAGGAGGGTAGGGGATTGGAAAAGTGTTCTGAGGGAAGTTGATGTTGCTGTTGCTGCTGGAGCTGACTCTTGTCCTCAGCTCTTTATTTGTAGAGCAGAAGCCCTTTTGAAGGTGCATCAAATTGATGATGCAGAATCAATTTTGTCACATGTTCCCAAATCAGAACCACATACAAATTCCTCTTCTCAAGCAAGATTTTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTGA 1281 0.5332 MSHSSGKPVSEVVGLDTFTDRFRDTLNCEANKPDFRELDLGSPVSPLRTRGPAASSSSGSSGSVSAGRNGQNPVPKRSDSTTNNNTNNSGELSGSSENSPTAAAESQRSAGNNARGFKPGHVRSDSGSAPMPLIYSGQTVNSPALNVLPTGNICPSGRIIKTGMAANRGSRSDVLGSGTGNYGHGSIMRGGSAAAAKGDTANVRCSIGNDKRGVQSVDPEELKRAGNEHYKKGHFADALSLYDRAIALSPASAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYHGLQPDPSEMQKLQMVEKHISKCADFRRVGDWKSVLREVDVAVAAGADSCPQLFICRAEALLKVHQIDDAESILSHVPKSEPHTNSSSQARFFGMLSEAYSYFVRAQIEMALGR. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06044 426 SUPERFAMILY TPR-like 219 394 IPR011990 GO:0005515
Seca3g06044 426 MobiDBLite consensus disorder prediction 49 113 - -
Seca3g06044 426 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 426 IPR044534 -
Seca3g06044 426 Gene3D Tetratricopeptide repeat domain 217 425 IPR011990 GO:0005515
Seca3g06044 426 MobiDBLite consensus disorder prediction 1 130 - -
Seca3g06044 426 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Seca3g06044 426 Pfam Tetratricopeptide repeat 225 285 - -
Seca3g06044 426 MobiDBLite consensus disorder prediction 22 36 - -
Seca3g06044 426 SMART tpr_5 363 396 IPR019734 GO:0005515
Seca3g06044 426 SMART tpr_5 219 252 IPR019734 GO:0005515
Seca3g06044 426 SMART tpr_5 253 286 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06044 Seca-Chr3 126626902 126630719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06044 213 310 U-box Gene Family AT3G07370 35.714 9.88e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06044 - - gmx:100795358 585.489