Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06039 ATGTTAGTCGGCAACGAAATAGAAGATTTATGCAATGATAACTTTGAAGGATCTAATGAAGAAAGAAAGATTTTTACAGAGGTCTTTTCTGGTACTGACATTTTTCAGTCTAGCCAGAGGTATCTTGTTTCTGGAGTTATCAACTTTGAACATGAATCTACTAAAACCACATTTAAATCATTTGGCTCTAGTAATGAAAACTCAGTCGTATTGCGTCCCTTGTCTTCAAGACTTACACATCCTGAAGAGGAATTTAATGTAATTCCGCATTCCAAAGAGACTGCTCCGGGGTGTATGCCAGACAGTTCCATTTGTGAAGACCAGAATGATGAGGATGTAAATGTCAAGCGTATGAAATTTTCTCTGCATGAACCTCCTTGTAGTATATCTAATTCAGAAAATGTTTCAAGTCCATCAGGACTTTCAAAAGTAGTAGTTTCTAAGCTGTCTCATGCTGCTACAGACTGTGATAGTGAACAAATTGCATTTCGATTAGTTGAATCATCTAAACATGGTGTGATATCTAGTTGCTATCTGTTGAAGCATAATATGTTACAGAATAAACAAGCTACTAAGGATGATGTAGATGTTACAAATTGTAAATCAACTACAGCAGATGGGAATGTTGCTAAAGAGGTGTCTGTAAGTAAAGTGGTTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAACAGGCTTGCAGTTACTAGTCCACCAATCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCAGAAGAGTTTCTATCTTCTAATATGGATATCTCGAATTCGTCCTCAAAGCTAGACAAAGAGGATCCCCGTGCTTTATTGCAGTTTCATATTGTGGAGTTGCTTAGGATGGCAGGGTGGTCTATTGAGAAGCGTCATCGACCTAGCAGGCGTTACATGGAATCAGTTTATAGGACACCAAAGGGAAAGCCTATTCGGGAATTTACAAAAGCATGGAGATTATGTGGTCAGCTTTTATCTGTTCAGAAATGCCATTTAATGAATGGAGATTGTAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAACAAAGACACAGTCAGAGCCTGCTGCTATGTTGGCTCATCAATGGAGGCTTTTGGATCCTTTTGTTGTAGTTATATTTGTTGATAGAAAGATTGGTGCACTGAAAAAGGGAGAGGTAGTAAAAGCAACTTGGAGTTTAGTTTCTAACAAGTATAATATGGAATGTGCTCCCATTGATTCAGCTCAGGAGAATAATTCTGGTGCTCATTTTGATAAAAAACATGACCAAGCTTTTCCCTGCGATTCTTCTACAGCCACTGGAACCACACTAACTCCTGTGATTAACTACCCTGCCTGTAATCAGAAATCTGATGGTAACCGGGAAAATAAGCATGTTGTACAACATAATCCCAACAGCATAGGAAATCAATGTGGGAAAATGTCTGTGAACAAAAGCAGTATGGATCTAGTTTCTTTACCTGGTTATGGATTGGATAGCACTGGTACCAAGTCAAGTGCTTCCCCTTTAGATATTCATACAAACTCTGGAAATTCAAACAAGGTACTTGGAGTGTCTAAAGTAAATTCTGTTCATCAAGCTAATTCCAAAAGCTGTGACAAACAGAGATCAGAAAATCATCTGAAAACAAATAAAAGAATCGATGGAGATGTGCCAATGGACATCTCAGAGAAAAATAATGCATATGGGGTAAGCCATGGCATGGTTCATTCTCACGATTCAGAGACTATTCAACAGGCTGAATGTAGTGAGGAAGAAGGCAGGAAAATCTCAATAGCTTCTTTATTCAGAAAAGACAACACATATTCTGCCACTAGTGTTGCTTTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACCGAGTATGTTATCCCATGGTGACAAGCTGGGCTCAACTGTTACTGACCAAACGCAGTCACTGAATGATGATTCATGTGACACTCAGTCAGGGTTGGAAGAGGTCCAGGATTACCTAGTTGACAATGCAGGAAAAAAAAGAAACCACAGGAAGTTATCATCCGTCAGTGCAATCCAGCAACATATTAGGAAAACAAACTACTCCATAACTGGAACAAATAAGTCCAATGGATGCCGAATTAAAGATGATGATCTATTAGTGTCAGCGATATTCAGGAATAAGGACTTAAGCCCAAAGACAATCCGAGGTAATTCTAGAGCTAAATCCTGCAAATCAAGGGGATGGAGAAAGCTCAAAAGCCAAAAGGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGAGGGAAGCCCAATAAGGATGGCAAGAGGTATTTTCTTGGGGCAAGGACACTCTTATCCTGGTTGATTGAGAATGGGGTGATATCTTTAAATGATGTGATTCAATACCGAAACCCTAAAGATAATTCTGTCACTAAGGACGGTAGGGTCACCAAAGATGGCATTATTTGTAAGTGCTGTGGTAAGATGCTTACACTATCAGAGTTCAAGTTTCATGCTGGGTATACACAGAGTCGCCCCTGCCTGAATCTTTTCATGGAGTCTGGTGAGCCCTTTACATTATGCCTCCTTCAAGCTTGGTCAGCAGAATACAAAGCCAGGAAAAGTCAGAATCAAGCTGTGCCTGTTGATGACAATGATAAAAATGATGACTCCTGTGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGTCCATCTACTTTTCACCTGGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAACTGCACTTGTCGGATATGTGGAAATTTGGCCCTTGATAAGGAGGCTTCAGATGTGTATAATTCGTTACAATGTTCACAGTGCGAACATAAATATCATGAGAAATGCCTGAGAGAAAGAGATAAACAAGAAGGGGTGGTTTCAGACACTTGGTTTTGTGGTCAGGGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAGGTGGGATTAGTTAATCAAGTTGCTGATGGCTTCTCATGGATGCTTCTTAGGTGCATCCATGATGACCAAAAGGTTCATTCTGCCCAGCGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTATCTGTTGCCCTTACGATCATGGAGGAGTGTTTTTTGTCAATGTTGGATCCAAGAACAGGCATCCACATGATCCCCCAAGTTTTATACAACTGGGGGTCTGATTTTGCGCGTCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCTCTAATTGCAACTTGTAGTCGGTATCGTCGTCAGGGAATGTGCCGACTCCTTGTGAATGCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGATAGCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCGTACCTGTAGGTGACATCGAAAAGCAAAGATTGAACAAAATCAACTTGATGGTTTTTCCTGGGACAATGTTACTTGAAAAACCCTTGTACAGGAAGGAGAAGAGTGAAGGACTGTGTGATCAATCAACTTTAGCAACAGATGAATCAATCAAAGTAAGTATCTGTTCTGAAGGAATGGCCATAGCTGAATCATTGCCGCAAGATGCTGGAAACATAACTACAGATGAAGTTGGTGCTAAGTCAGAATATGAACCTGTGGACGGAAAAAATCAACTAGACCAAAGGGCTGGCAGTGAAACCATTAGAGATGATAATACTCAAGCTGTTGACACTGTATTGGGAGCCAAAGAATCAACAGAAACAAGTAGCTGTGTCAGAGAAGAGAAGATCAGCCACTTGGTGGTATCTGGTGAATCAGAGGAATCTATTGAAGGAAACAACATTCAGGAATTGAGGAAAAGCAACAAAATGCAAATGGCAAGTGAGTTGGTACAGCAGTCTAGTGAGAACTGTTGTGCTAACAAAGATGGTACTGAATCAGGTGTAAGAATTATTGAGGGCAAGAATCTGAAAACAGATGTTCAGGAAAATGCTTTGCATGGCCATTTTTCAAATATGTCGTGCAAAACATTTTCAGGCAGCAATTTTGACAGAGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACACTTGCAAAGTCTGCAAGCTGA 4242 0.405 MLVGNEIEDLCNDNFEGSNEERKIFTEVFSGTDIFQSSQRYLVSGVINFEHESTKTTFKSFGSSNENSVVLRPLSSRLTHPEEEFNVIPHSKETAPGCMPDSSICEDQNDEDVNVKRMKFSLHEPPCSISNSENVSSPSGLSKVVVSKLSHAATDCDSEQIAFRLVESSKHGVISSCYLLKHNMLQNKQATKDDVDVTNCKSTTADGNVAKEVSVSKVVASPVSQESFANRLAVTSPPITVVKKSGSPLNPEEMPEEFLSSNMDISNSSSKLDKEDPRALLQFHIVELLRMAGWSIEKRHRPSRRYMESVYRTPKGKPIREFTKAWRLCGQLLSVQKCHLMNGDCKEWTDISQFWSDLSSALINVEKTKTQSEPAAMLAHQWRLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSNKYNMECAPIDSAQENNSGAHFDKKHDQAFPCDSSTATGTTLTPVINYPACNQKSDGNRENKHVVQHNPNSIGNQCGKMSVNKSSMDLVSLPGYGLDSTGTKSSASPLDIHTNSGNSNKVLGVSKVNSVHQANSKSCDKQRSENHLKTNKRIDGDVPMDISEKNNAYGVSHGMVHSHDSETIQQAECSEEEGRKISIASLFRKDNTYSATSVAFKKKMRRKCKRVSEIKPSMLSHGDKLGSTVTDQTQSLNDDSCDTQSGLEEVQDYLVDNAGKKRNHRKLSSVSAIQQHIRKTNYSITGTNKSNGCRIKDDDLLVSAIFRNKDLSPKTIRGNSRAKSCKSRGWRKLKSQKGRCRLLPRNPCNGGKPNKDGKRYFLGARTLLSWLIENGVISLNDVIQYRNPKDNSVTKDGRVTKDGIICKCCGKMLTLSEFKFHAGYTQSRPCLNLFMESGEPFTLCLLQAWSAEYKARKSQNQAVPVDDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGNLALDKEASDVYNSLQCSQCEHKYHEKCLRERDKQEGVVSDTWFCGQGCQEVYSGLQSQVGLVNQVADGFSWMLLRCIHDDQKVHSAQRFALKAVCNTKLSVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVNAIEEMLISVKVEKLVIAAIPDLVETWTKGFGFVPVGDIEKQRLNKINLMVFPGTMLLEKPLYRKEKSEGLCDQSTLATDESIKVSICSEGMAIAESLPQDAGNITTDEVGAKSEYEPVDGKNQLDQRAGSETIRDDNTQAVDTVLGAKESTETSSCVREEKISHLVVSGESEESIEGNNIQELRKSNKMQMASELVQQSSENCCANKDGTESGVRIIEGKNLKTDVQENALHGHFSNMSCKTFSGSNFDRDSNIECSVMYDETAFFGTLAKSAS. 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06039 1413 Pfam Tify domain binding domain 826 876 IPR032308 -
Seca3g06039 1413 ProSiteProfiles Zinc finger PHD-type profile. 901 946 IPR019787 -
Seca3g06039 1413 MobiDBLite consensus disorder prediction 648 672 - -
Seca3g06039 1413 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1054 1201 IPR000182 GO:0016747
Seca3g06039 1413 MobiDBLite consensus disorder prediction 470 490 - -
Seca3g06039 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 894 945 IPR013083 -
Seca3g06039 1413 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1090 1178 IPR016181 -
Seca3g06039 1413 CDD PHD1_AIRE 904 943 - -
Seca3g06039 1413 Gene3D - 1075 1188 - -
Seca3g06039 1413 MobiDBLite consensus disorder prediction 652 672 - -
Seca3g06039 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 946 1002 IPR013083 -
Seca3g06039 1413 PANTHER PHD FINGER FAMILY PROTEIN 1 1346 - -
Seca3g06039 1413 SUPERFAMILY FYVE/PHD zinc finger 896 949 IPR011011 -
Seca3g06039 1413 Pfam PHD-finger 904 945 IPR019787 -
Seca3g06039 1413 SMART PHD_3 945 999 IPR001965 -
Seca3g06039 1413 SMART PHD_3 903 944 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06039 Seca-Chr3 126393614 126403969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06039 1 410 PHD Transcription Factor Family AT3G14980 33.894 1.16e-49 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g06039 TDBD 6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06039 - - lja:Lj3g3v1061160.1 2122.44