Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06037 ATGAATTGTCTGTCTATTCTTTTCCGGAAAAGGGGATCTGCCTCAGCAACACAATCAACCGAAATTGAAATAGATATTTCAGACATTCAGAATGTCAATCTTTACACTTACAAGGAATTGCAAATTGCTACCGAAGGTTTCAGTCCAGCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTTAGAGATGGTACTCTGGCTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGTGTCCGTGAGTTTTTGACAGAAATCAAGGTTATCTCTAGTGTAGAGCATGAGAATTTAGTTAAGTTGTATGGATGCTGCGTGGAAGGAAACCGCAGGATTTTGGTATATGGCTATCTTGAGAATAACAGTCTAGCACAAACACTTCTTGGTAAGTAA 408 0.3971 MNCLSILFRKRGSASATQSTEIEIDISDIQNVNLYTYKELQIATEGFSPANKIGEGGFGSVYKGKLRDGTLAAIKVLSAESRQGVREFLTEIKVISSVEHENLVKLYGCCVEGNRRILVYGYLENNSLAQTLLGK. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06037 135 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca3g06037 135 Pfam Protein tyrosine and serine/threonine kinase 51 132 IPR001245 GO:0004672|GO:0006468
Seca3g06037 135 Gene3D Phosphorylase Kinase; domain 1 15 122 - -
Seca3g06037 135 SUPERFAMILY Protein kinase-like (PK-like) 21 134 IPR011009 -
Seca3g06037 135 ProSiteProfiles Protein kinase domain profile. 47 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06037 135 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 134 - -
Seca3g06037 135 FunFam cold-responsive protein kinase 1 17 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06037 Seca-Chr3 126319683 126321579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06037 35 134 Receptor kinase-like Gene Family AT1G53430 62.000 4.03e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06037 PK_Tyr_Ser-Thr 5.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06037 - - gmx:100797257 218.394