Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06036 ATGGGATCACCATTCAAGCCCATCTCATGCACCAGAAAAACCCCATATAGATTAGAAACCAAAAACTTATCATACAAATTGTGCAGCCAACTTGATGAATATAGAAGCCTTTGTTTTGGTTCAAATCCTAGGAGAGGTGCAAAGTTCATTTTGAAGGATGTAAATTGTGAGGCAAGGCCAGGGGAACTCACAGCTATTGCCGGTCCTAGTGGAGCTGGAAAAACCACACTGCTTGAAATTCTTGCAGGGAGAATACCCCCATGTAAAGTGTCTGGGCAAGTGCTTGTCAATCATAGGCCTATGGATGTGCACAGATTCAGAAGAACATCTGGGTATGTCACACAGGAAGATGCTTTGTTCCCATCACTTACAGTTAGAGAGACACTCATGTATAGTGCTTTGCTGAGGCTTCCTGGGGGGCGAAAAGTGGCTGTCATCAGAGTTGCAGAGTTGATGAAGGAGCTTGGATTGGATCATATTGCAGATTCAAGAATTGGTGATGGTGATCATGGCATCTCAGGTGGGGAAAGGCGTAGAGTTTCCATTGGTGTTGACTTAGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTCAATGTAGTCTCATTGCTTAGACTAATGGCATTTAATCAAGGTAAGACAATTATTTTAACTATCCACCAACCTGGTTTCCGAATCCTAGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTCATGCATAATGGGTCATTGAATCTTCTTGAGGCTAGGCTCAAGTTAGCTGGGCATCACATTCCTGACCATGTCAATGTCCTAGAATTCGCTCTTGATGTCATGGGAAGCTTGGTCATACATACTTCAGAATCTCGGAACAACCAATTTCTTCTCAATGACAGAGAGCACAGAGATCACAAGATGAGGATGCAATATTCTAAGATTGTCAAAGAAAAGGCTCTTTTGTACTCAAATTCTCCAATAGAGGAGATTTTAATCCTAGGACAAAGATTTTGCAGCAACATATTCAGAACCAAGCAACTCTTTGTCACCAGGGTCATACAGGCCATAGTAGCTGGATTTGTACTGGGAACCATATTTTTGAATGTTGGCAACCAACAAAGTCATGTAGCATTGCAAACACGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTCTTGTTATCATCAACAACAGAAGGCCTGCCTATTTTCTTGGAGGAGAGAAGAACTTTGATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTAGCAAATACCTTTGTGTTTCTTCCTTTCCTTCTAATGGTTGGTCTTCTGTACAGTACTCCAGTTTATTGGCTGGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTGCTCATGTCGAATTCTCTTGTGGCTTGTTTCAGCGCACTGGTACCAAATTTCATCCTGGGAACCTCAGTGATTGCAGGTCTAATGGGGTCTTTCTTTCTATTTTCAGGGTATTTCATATCAAAGGAAAAAATACCCAGTTACTGGATTTTTATGCACTATTTGAGTCTATTCAAGTACCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGAGAGCAGGGGAAAAGGAGATGCATAGAAATTAGCAATGGAGAATGCATATTACACGGAGCTGAGTTCTTAAGACAACAGGGTCTGAAAGAAACACATAAATGGACCAATTTGGCTGTAATGTCGAGCTTTATACTGGGGTATAGAGTGCTTAGCTTTTTTATTCTTTGGTCCAGATGTTACAGAACCAGAAAATAG 1836 0.4134 MGSPFKPISCTRKTPYRLETKNLSYKLCSQLDEYRSLCFGSNPRRGAKFILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRIPPCKVSGQVLVNHRPMDVHRFRRTSGYVTQEDALFPSLTVRETLMYSALLRLPGGRKVAVIRVAELMKELGLDHIADSRIGDGDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALNVVSLLRLMAFNQGKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMGSLVIHTSESRNNQFLLNDREHRDHKMRMQYSKIVKEKALLYSNSPIEEILILGQRFCSNIFRTKQLFVTRVIQAIVAGFVLGTIFLNVGNQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTLMRETSRGAYRVSSYVLANTFVFLPFLLMVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISKEKIPSYWIFMHYLSLFKYPFECLMINEYGGEQGKRRCIEISNGECILHGAEFLRQQGLKETHKWTNLAVMSSFILGYRVLSFFILWSRCYRTRK. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06036 611 Gene3D - 18 273 IPR027417 -
Seca3g06036 611 Pfam ABC-2 type transporter 230 315 IPR043926 GO:0140359
Seca3g06036 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 596 - -
Seca3g06036 611 CDD ABCG_EPDR 17 255 - -
Seca3g06036 611 ProSitePatterns ABC transporters family signature. 172 186 IPR017871 GO:0005524|GO:0016887
Seca3g06036 611 Pfam ABC transporter 51 200 IPR003439 GO:0005524
Seca3g06036 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 273 IPR003439 GO:0005524
Seca3g06036 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 265 IPR027417 -
Seca3g06036 611 SMART AAA_5 60 250 IPR003593 GO:0016887
Seca3g06036 611 FunFam ABC transporter G family member 10 35 279 - -
Seca3g06036 611 Pfam ABC-2 type transporter 334 545 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06036 Seca-Chr3 126313810 126315645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06036 31 260 Calmodulin-binding Proteins AT2G36910 28.270 4.29e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06036 K05681 - gmx:100776372 1094.72