Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06032 ATGCTTAACAATGGAGTGTGCAGTCTCCGCACGTGCCTCCGTTTCCCGGAGAGACCCCTATTCCGAGCATTTCCTCTCTCATTCAGTCACCGCCGGCGGTTTCTCGCCACTGCAGCCGAAACTAAGAAGAAAGAGAAGGTGATAGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGACTCGCATTGGAGCTCGCAAAACGCCTCAACGGCGAAATCGTCAGTGCCGACTCTGTCCAGGTATATCGGGGTCTTGATGTTGGATCTGCGAAGCCTTCCCTAAATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTTCATCCATCTGAAGAGCTTTTATTTTCCCCAATTAAAACTAATTATTATTCATCAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGGTGTATTCTTGACAACAGCCGTGTTCCCATAGTTGTTGGGGGCACTGGACTTTATTTAAGATGGTATGTCTTTTTCAATTACCTTTTGGTCCTGTTATGA 525 0.4705 MLNNGVCSLRTCLRFPERPLFRAFPLSFSHRRRFLATAAETKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSLNERKEVPHHLVDILHPSEELLFSPIKTNYYSSDYSVGQFFEDARQATRCILDNSRVPIVVGGTGLYLRWYVFFNYLLVLL. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06032 174 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 165 IPR039657 -
Seca3g06032 174 Gene3D - 43 171 IPR027417 -
Seca3g06032 174 Pfam IPP transferase 80 165 - -
Seca3g06032 174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 167 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06032 Seca-Chr3 126280070 126281492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06032 50 165 C2H2 Transcription Factor Family AT2G27760 37.069 4.98e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06032 K00791 - gmx:100808814 257.684