Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06017 ATGGATTGGGTACGAGGAGATTCAATTGGAAGAGGAAGCTTCACTACTGTCAATTTGGCTAAACCAACCACAAGCAATTCCACTTGGTTTTCTTGTCCGACCGTTGTTAAATCCTCTGAGGCTTCAACCTCGTTTTCGCTAAAGAACGAGAAAAATGTCCTCGATTGCTTAGGTTCATGCCGGAGAATCATTCGGTGTTTCGGCGATGACTACACGTTCGAGAATGGTGAAGAGTATTACAATTTGTTCCTTGAATACGCCGCCAGCGGGAGTCTCTCTGATCAACTGAAGTTCCACGGTGGTCGGATTCCGGAGCAACGAGTTCGGAGTTACACGAGGTCTGTTATCGAGGGGCTTATGCATATTCACAAGAACGGGTTTGTTCACTGTGGTGTGAAGCTTTAG 405 0.4642 MDWVRGDSIGRGSFTTVNLAKPTTSNSTWFSCPTVVKSSEASTSFSLKNEKNVLDCLGSCRRIIRCFGDDYTFENGEEYYNLFLEYAASGSLSDQLKFHGGRIPEQRVRSYTRSVIEGLMHIHKNGFVHCGVKL. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06017 134 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Seca3g06017 134 SUPERFAMILY Protein kinase-like (PK-like) 3 133 IPR011009 -
Seca3g06017 134 Gene3D Transferase(Phosphotransferase) domain 1 1 134 - -
Seca3g06017 134 ProSiteProfiles Protein kinase domain profile. 3 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06017 134 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 133 - -
Seca3g06017 134 Pfam Protein kinase domain 5 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06017 Seca-Chr3 125758901 125759305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06017 1 134 MAP Kinase Kinase Kinase AT4G36950 54.478 3.70e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g06017 Pkinase 4.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06017 - - lja:Lj0g3v0312569.1 209.92