Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06009 ATGAGTGGGGGTGGGGAGATAGTGGAAGTTGAAGGAGGTCACATTGTACGGTCAAGGGGAAGGAAGGACCGTCACAGCAAGGTATGCACCGCCAAAGGACCAAGGGACCGCCGGGTCCGTCTCTCGGCCCACACCGCCATCCAATTCTACGACGTACAAGACCGACTGGGCTTCGACCGGCCCAGCAAGGCCCTCGACTGGCTCATCAACAAAGCCAAATCCGCCATCGACCAACTCGCTCACCTCCCACCGTGGAAACCCACCCTCTCACACCAAAACGACGACGTAGCGGAGAAAGAGAATCCCAACCCTAACCTCAACCACAACCACAACGACGAACACTCTGGTTTTCTCCATCACCAACAATTGGAGGAGAACGAGAATGAGAATGAGAATGAGAAAGAGAACCCCAACCATCACTCTGGGGGTTTGGGGTTTCTTCCGTTGGAAAACGACATCGTCTTCGCTACAACGACGTCGTCTTCGCCGATTCAGTTCCATAGTTACCCGCCAGATTTGCTTTCCAGAACAAGCAGCCAGGACCTGCGGCTCTCGCTTCAGTCCTTTCAGGACCCGATTCTGCTTCACCACCATCACCACCAAAACGAGCACGTGCACCAGCACCAGCACGTGCTCTTCAGCGGAACCCTTGATGGAATGGTAGCTTGGAATAGTGCTAATGCTACTACTGGTGGTGGTGCTATTGATACTGGTAATAACGACGGTTCTGGTGGAGGCTTCGTTTTTAACGTTCCTTCGCCGTTACCGTCGGTGATGTTTGGGCAGAGCCAGTATCTTTCTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAACCCTTCCTTTCGTGCTTGGATTGACGCGCCGTCGTCTTTCATCGCCGCTACGGATCATCGACGCCACTGTCTTTCACCAGTGGCGCTGGTGCATCAGTCTTCTTCTTCATCGTCGGGCGCCGGATTCGCCTCTGGTGGCTTCTCCGGTTTCCGTGTGCCGGCACGAATTCAGGGTGAGGAGGAGGAGCACGGCGGCGTCTCCGATAAGCCGTCATCTGCTTCCTCCGATTCTCGCCGTTGA 1074 0.5512 MSGGGEIVEVEGGHIVRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKALDWLINKAKSAIDQLAHLPPWKPTLSHQNDDVAEKENPNPNLNHNHNDEHSGFLHHQQLEENENENENEKENPNHHSGGLGFLPLENDIVFATTTSSSPIQFHSYPPDLLSRTSSQDLRLSLQSFQDPILLHHHHHQNEHVHQHQHVLFSGTLDGMVAWNSANATTGGGAIDTGNNDGSGGGFVFNVPSPLPSVMFGQSQYLSSQRGPLQSSNNPSFRAWIDAPSSFIAATDHRRHCLSPVALVHQSSSSSSGAGFASGGFSGFRVPARIQGEEEEHGGVSDKPSSASSDSRR. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06009 357 ProSiteProfiles TCP domain profile. 21 79 IPR017887 -
Seca3g06009 357 MobiDBLite consensus disorder prediction 331 357 - -
Seca3g06009 357 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g06009 357 MobiDBLite consensus disorder prediction 86 145 - -
Seca3g06009 357 MobiDBLite consensus disorder prediction 112 138 - -
Seca3g06009 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 274 IPR005333 GO:0003700
Seca3g06009 357 MobiDBLite consensus disorder prediction 333 357 - -
Seca3g06009 357 Pfam TCP family transcription factor 20 137 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06009 Seca-Chr3 125483150 125484223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06009 3 356 TCP Transcription Factor Family AT1G53230 46.114 9.60e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g06009 TCP 3.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06009 - - gmx:100802063 372.474