Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05995 ATGGCGAAAACGAGGCCAGGCAAAAAAGACTTGGACTCATACACCATCAGAGGCACCAACAAGATCGTAAGAGAAAGGTGTGGTTTTTTATTTTTACTTTTACTTTTTTTGGCAGCTGGAGACTGTGTGTTGATGCGCCCTTCCGATACAAGCAAGCCACCGTACGTCGCGCGCGTGGAGAAGATCGAGCAGGATAGTAGGAACAACGTGAAGGTGCGTGTGAGATGGTACTATCGACCTGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCAAAGGAACTGTTTTTGTCTGACCATTATGATATTCAGAGTGCCCACACTATTGAAGGGAAGTGTATTGTGCACTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGTGCTGAAGATTACTATTGTAGGTTTGAATACAAGGCTGCTACTGGGGCTTTCACGCCTGACCGTGTTGCTGTGTACTGCAAATGTGAGATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGTGTAGGCATGACCATTGAAGAAGCAAAGAAATTGGACCATTTTGTATGTTCTGAATGTTCGTCTGATGATGACATGAAGAAACCCCAGTCTACATTTCCTGTATCACCAGGATCTGATTGCAAGGTGGAGCCCAAGCGGCGGAAGAGATGA 693 0.4632 MAKTRPGKKDLDSYTIRGTNKIVRERCGFLFLLLLFLAAGDCVLMRPSDTSKPPYVARVEKIEQDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQSTFPVSPGSDCKVEPKRRKR. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05995 230 SMART PHD_3 154 201 IPR001965 -
Seca3g05995 230 CDD BAH_BAHCC1 40 170 - -
Seca3g05995 230 SMART BAH_4 35 150 IPR001025 GO:0003682
Seca3g05995 230 FunFam Chromatin remodeling protein EBS 1 146 - -
Seca3g05995 230 SUPERFAMILY FYVE/PHD zinc finger 146 204 IPR011011 -
Seca3g05995 230 ProSiteProfiles BAH domain profile. 35 150 IPR001025 GO:0003682
Seca3g05995 230 FunFam Bromo-adjacent homology (BAH) domain-containing protein 147 218 - -
Seca3g05995 230 ProSitePatterns Zinc finger PHD-type signature. 155 200 IPR019786 -
Seca3g05995 230 Gene3D - 36 146 IPR043151 -
Seca3g05995 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 213 IPR013083 -
Seca3g05995 230 ProSiteProfiles Zinc finger PHD-type profile. 152 203 IPR019787 -
Seca3g05995 230 PANTHER OS08G0421900 PROTEIN 1 222 - -
Seca3g05995 230 MobiDBLite consensus disorder prediction 201 230 - -
Seca3g05995 230 Pfam BAH domain 37 149 IPR001025 GO:0003682
Seca3g05995 230 Pfam PHD-finger 154 202 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05995 Seca-Chr3 125174807 125179378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05995 45 146 Core DNA Replication Machinery Family AT4G14700 29.126 4.10e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g05995 BAH 8.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05995 K25868 - gmx:100800993 442.965