Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05989 ATGACCGTGCTAAAATTTGCACTAGGAAATACAGCAGCTGATGAAGGCGTTCATGTCATGGGCATAATAGGAGCTATTACAAACAACAATTCTCGCATTGGTAAAGAGGAGATAGTGGCTATGAAGATGGCATTGGATGATTTCTATAATTACAGCAATCAAACATTTGCTCTACAGATAAGGAACTCACAAGGGGATCCCTTTCAGGCTGCTCTTGCAGCTAGAGATCTTATTGGAAAACAGCACGTGCAAGCAATTATAGGACCTCAAACATGGGAAGAGACAAATTTAGTGGCTGAGATTTGTAACCAAAATATGACACCAGTTCTATCTCTAGGTGATGCAACTCCCAAGTGGTCAACTTTGAAATGGCCTTTCCTGGTGCGAACCACTCCTAGTCAATTTAAGCAGATGAAAGCAGTGGCTGCTATTGTTCAGTCCTGGGAATGGTACAATGTTAACATAATATATGAAGATAGAGATGTTTCATCAACACGAACTTTATCACATCTCTATAGAGCCCTGAGAGAAGTAGGTGTAGAAGTAAGTACTCTTTTAGCTATCCCACCTTTTGTTTCCTCTTCATTACCCCAACAACTTGAGAAGCTTAGAGAAGGCCAATGCAGAGTCTTTATTGTTAATTTGTCCCTAACTTTGGCCATAAACCTGTTTGAAACGGCAAGGAAAATGAATATGATGGAGACAGATTATGTATGGATCATTACTGACCCTTTTACAAGTCTTGTCCATTCCTTGAATGCATCCACTATATCCTCCATGCAAGGGATCATTGGAGTCAAGAGCTACTTCCCAGAAACAGGGCACCAATATGAAGACTTCTACCTTAAATTTCGCCAAAAGTTTAGCTTAGAGAACCCTCAGGAATTTAACAATGAGCCTGGGATATTTGCAGTCCATGCTTATGATGTTGCATGGACTGTTGCTCTAGCCATGAGCCAAACCAACAGTAAAGGGGGTCAAGTTTTGCTAGATAAGATTTTGGTTAATAATTTTACTGACTTAAGTGGAAAAATGCAGTTCAATGACCAAAAATTAGCTCCTTTACAGACTTTTCAGATCATTAATGTGATGGGGAAGGGTTACAAGGAAATTGGGTTCTGGTCAGATGGGCCTGGTTTCTCAAAAGATATTGGCCCAAATGCTACCTACAATTCTTCAATGAAGGAACTGGGGCAAGTTTTGTGGCCAGGAAGACCTTGGAACACTCCAAGAGGATGGGCCCTGCCAACAAGTGATAAACCACTAAGAGTTGGAGTCCCAGTTTTGGCCACATTGAAACAATACATAACTGTAATTCAAGACCAAACTGATAATACTACCACCTTCCAGGGTTTCACTATTGATCTTTTCACAGCAACTATGGAGTTGTTGCCCTTCCATTTGCCATACAAATTCTATCCTTTCAATGACACATATGATAATTTGGTGAAGCAAATTTATTTGAAGGTAATTATTAATTATAACACTTGTTTTCATATCTCCACTTATCTATGCATGAAGCAGAATTTTGATGCAGTAATTGATGTTACCATAATTTCATATCGATATCAGTACGCTGAATTCACTCAACCATACACTGATCCGGGAGTGGTAATGGTAGTCCCACTTAAATCAAAAACAGCTCATAGAGCTTGGTTATTCATGAAGCCTTTTACAAAGACCATGTGGATTCTAATAGTGCTCATGGTTATCTACAATGGCTTTGCTCTATGGATATTAGAAAGACGCCATAGTCCTGAAATTAACGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAACTCACATGGGGATAGGTTACACAACAATTTGTCAAGGATAAGTATGGTGGTCTGGCTATTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGTTGAAAGGCTTGAACCAACAGTAGATAATGTTGATCAAGTTAGGAATAGCAATGCTGTGGTTGGATATGGTACAGGATCCTTCTTGAGAAATTATCTGCAGGAAGTGTTACAGTTCCACCATTCAAACATCAGGCAATTTAGTGAGCTAGAAGAGTATGCTGAAGCTCTCAGAAGGAGAGAAATAGCAGCTGCTTTTCTTGAAGTTCCTGCATCCAAAATTTTCCTTGCAAAATATTGTAAAGAGTTTGTTCAAGCCGGGCCATTGTATAAAATTGGAGGATTTGGATTTGCATTTCCAAAGGGATCTCCAATTCTTCCAAGTGTGAACAAAGCACTGCTAGATTTATTTGAAACTGGCAAAGTACGTGAATTAGAGAGCAAAATGCTTGCATCTGAGCAGTGTGAAGATAAAGAGCTAGATGGAGAAACTGCAAGTCTTAGCCCCAACAGTTTCTGGGCCCTCTTCACATTGACAACAGGTACATCAACAATTGCTCTTTTGGTTTACCATATTCGTATGAACTATGCAAATCTTGAAGAGAGAACAATCCGGAAACTGATGATTTTGATCATTCAACAATGGGGCCATGCAAAGAGAAGAATATCAAGAAGAGTTAGTGATGTTGCAGAAAGTCCTATGAACCCTCCAAACACACATGCTATGCCAGCTCAAGTTTAA 2622 0.3982 MTVLKFALGNTAADEGVHVMGIIGAITNNNSRIGKEEIVAMKMALDDFYNYSNQTFALQIRNSQGDPFQAALAARDLIGKQHVQAIIGPQTWEETNLVAEICNQNMTPVLSLGDATPKWSTLKWPFLVRTTPSQFKQMKAVAAIVQSWEWYNVNIIYEDRDVSSTRTLSHLYRALREVGVEVSTLLAIPPFVSSSLPQQLEKLREGQCRVFIVNLSLTLAINLFETARKMNMMETDYVWIITDPFTSLVHSLNASTISSMQGIIGVKSYFPETGHQYEDFYLKFRQKFSLENPQEFNNEPGIFAVHAYDVAWTVALAMSQTNSKGGQVLLDKILVNNFTDLSGKMQFNDQKLAPLQTFQIINVMGKGYKEIGFWSDGPGFSKDIGPNATYNSSMKELGQVLWPGRPWNTPRGWALPTSDKPLRVGVPVLATLKQYITVIQDQTDNTTTFQGFTIDLFTATMELLPFHLPYKFYPFNDTYDNLVKQIYLKVIINYNTCFHISTYLCMKQNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKTAHRAWLFMKPFTKTMWILIVLMVIYNGFALWILERRHSPEINGSMLNQTGTMAWLALTPLINSHGDRLHNNLSRISMVVWLFVALIITQTYTANLASMLTVERLEPTVDNVDQVRNSNAVVGYGTGSFLRNYLQEVLQFHHSNIRQFSELEEYAEALRRREIAAAFLEVPASKIFLAKYCKEFVQAGPLYKIGGFGFAFPKGSPILPSVNKALLDLFETGKVRELESKMLASEQCEDKELDGETASLSPNSFWALFTLTTGTSTIALLVYHIRMNYANLEERTIRKLMILIIQQWGHAKRRISRRVSDVAESPMNPPNTHAMPAQV. 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05989 873 MobiDBLite consensus disorder prediction 854 873 - -
Seca3g05989 873 Pfam Bacterial extracellular solute-binding proteins, family 3 508 775 IPR001638 -
Seca3g05989 873 FunFam Glutamate receptor 137 298 - -
Seca3g05989 873 Pfam Ligand-gated ion channel 776 807 IPR001320 GO:0015276|GO:0016020
Seca3g05989 873 Gene3D - 419 549 - -
Seca3g05989 873 Gene3D - 550 692 - -
Seca3g05989 873 Gene3D - 133 375 - -
Seca3g05989 873 SUPERFAMILY Periplasmic binding protein-like I 19 413 IPR028082 -
Seca3g05989 873 CDD GluR_Plant 420 777 - -
Seca3g05989 873 PIRSF IGluLR_plant 1 867 IPR017103 -
Seca3g05989 873 Pfam Receptor family ligand binding region 40 363 IPR001828 -
Seca3g05989 873 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 827 IPR015683 -
Seca3g05989 873 CDD PBP1_GABAb_receptor_plant 23 384 IPR044440 -
Seca3g05989 873 Gene3D - 723 784 - -
Seca3g05989 873 SUPERFAMILY Periplasmic binding protein-like II 399 775 - -
Seca3g05989 873 MobiDBLite consensus disorder prediction 859 873 - -
Seca3g05989 873 SMART GluR_14 421 779 IPR001320 GO:0015276|GO:0016020
Seca3g05989 873 Gene3D - 29 356 - -
Seca3g05989 873 FunFam Glutamate receptor 551 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05989 Seca-Chr3 124771755 124778912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05989 23 825 Ion Channels AT2G29110 32.220 9.80e-140 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05989 - - gmx:100799573 1208.36