Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05988 ATGGCACAGTTACCTCCTAAAATACCAACCATACCCCAAAATTGGCCATCTTTTCCTCACCAAAGGCCATCCACAATGGCTAACTTCTCCCCTAACACCACCGCCACATCTACCACCGTAACCGCAACATCACAACAACCGTCATGGGTTGACGAGTTCCTCGACTTCTCCTCGGCACGGCGAGGGGCTCACCGGCGCTCCGCCAGCGACTCCATTGCCTTCCTTGAATCGCCATTCCTCGAAGAATGCCGAAGCGACGGCGGTGGATTCGACAGGCTGGATGACGACCAGCTCATTTCCATGTTCTCCGATGAAGTCGCCGCCGTCTCACTTCCGCCGCCGCCGCTGTCGTCCACTTCCAACCCTTCCTCGCCGTCCTCTGACCAAAACAGTAACAACAACGACGAGAACCCAATGGCAATGGCGTTAGATGCTGTGCCTGTGCAAGACCATTACCTTCAGGTGAAGCCTAAGAATGAAACTGTTGAAGAAGAAAGCACGTGCAAGAATGAGACGGCTGCGGCGGCGCCATCCTCCGCTGCCACCACCACCACCTGCACTGAAACCGTTGTCGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACCGGCAATCAGCTCAGAGGTCAAGAGTGAGAAAGCTACAATACATTTCTGAGCTTGAAAGGAGCGTAACAACTTTGCAGACGGAGGTTTCAGCATTGTCACCAAGAGTTGCATTCTTGGACCATCAACGTTTGATTCTTAATGTCGACAACAGTGCCTTGAAGCAACGTATTGCTGCTTTGGCCCAGGACAAGATTTTCAAAGACGCTCACCAAGAAGCATTAAAGAAGGAAATAGAAAGACTGAGGCAAATCTATCACCAACAAAACCTGCAGAAGATGGGAAACACAGTCAACAACAATGGCCATTCTCTTCAATCACCACCAACATCACAGCCACAACCACATTCTCTCCATCAGCAGCTAACAGCCTCACAACCCTTGGGATTCAAGGACAAGGAGCAGCTCCTCAGTTGA 1020 0.5098 MAQLPPKIPTIPQNWPSFPHQRPSTMANFSPNTTATSTTVTATSQQPSWVDEFLDFSSARRGAHRRSASDSIAFLESPFLEECRSDGGGFDRLDDDQLISMFSDEVAAVSLPPPPLSSTSNPSSPSSDQNSNNNDENPMAMALDAVPVQDHYLQVKPKNETVEEESTCKNETAAAAPSSAATTTTCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQNLQKMGNTVNNNGHSLQSPPTSQPQPHSLHQQLTASQPLGFKDKEQLLS. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05988 339 MobiDBLite consensus disorder prediction 295 329 - -
Seca3g05988 339 Pfam bZIP transcription factor 194 238 IPR004827 GO:0003700|GO:0006355
Seca3g05988 339 MobiDBLite consensus disorder prediction 295 339 - -
Seca3g05988 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 244 IPR004827 GO:0003700|GO:0006355
Seca3g05988 339 CDD bZIP_plant_RF2 195 245 IPR044759 GO:0003700|GO:0006355
Seca3g05988 339 SUPERFAMILY Leucine zipper domain 194 248 IPR046347 GO:0003700|GO:0006355
Seca3g05988 339 MobiDBLite consensus disorder prediction 161 180 - -
Seca3g05988 339 PANTHER BASIC LEUCINE ZIPPER 34 1 315 - -
Seca3g05988 339 MobiDBLite consensus disorder prediction 121 138 - -
Seca3g05988 339 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
Seca3g05988 339 Coils Coil 273 293 - -
Seca3g05988 339 MobiDBLite consensus disorder prediction 109 138 - -
Seca3g05988 339 FunFam Basic leucine zipper 61 193 266 - -
Seca3g05988 339 Gene3D - 193 292 - -
Seca3g05988 339 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05988 Seca-Chr3 124767211 124770951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05988 1 272 bZIP Transcription Factor Family AT3G58120 52.365 6.85e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g05988 bZIP_1 8.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05988 - - gmx:100820197 404.445