Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05963 ATGACTGAACGTGTTGTTGGCACTAGTTCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACCAGGCAGGCATTTGCTATAAAGAAAGTTTTGAAGGACAAGTGGTACAAAAATCGTAAATTGCAGTTAATGCGCGTGATGGATCATCCAAATGTAATTTCCCTGAAGCATTGCTTCTTCTCTACAACAAGCAAGGATGATCTAAAGCACTACAATAGCATCAACCAAGGAATGCCCCTAATCTATGTGAAAATATTTAGGGCACTAGCATATATCCATACTGTACTTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCCCCCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTATGGTCAAGGGTGAATCAAACATTTCGTACATAACTTCGCGATACTATAGGGCCCCAGAACTAATATTTGGTGCAACAGAATATACAACTTCTATTGATATATGGTCAGCTGGTTATGTCTTTGCGGAACTACTTCTAGGCCAACCACTGTTTCGGGGAGAAAATCAGGTAGACCAACTTGTGGAGATTATTAAGGTTCTTGGTACTCCGACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATATAGTTTCTCAATTCCCGCATATAAAAGCTCATCCTTGGCATAAGGTTTTCCACAAGCGAATGCCTCTTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCATTGTCGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGACCAATGCTCGGCTACCTAATAGTCGTCCGCTCCCTCCCCTTTTCAACTTTAAACAAGAAGTATGTGTCTAA 873 0.4124 MTERVVGTSSFGIVFQAKCLETRQAFAIKKVLKDKWYKNRKLQLMRVMDHPNVISLKHCFFSTTSKDDLKHYNSINQGMPLIYVKIFRALAYIHTVLGVCHRDVKPQNILVDPPTHQVKLCDFGSAKVMVKGESNISYITSRYYRAPELIFGATEYTTSIDIWSAGYVFAELLLGQPLFRGENQVDQLVEIIKVLGTPTREEIRCMNPNYIVSQFPHIKAHPWHKVFHKRMPLEAIDLASRLLQYSPSLHCRALEACAHPFFDELRETNARLPNSRPLPPLFNFKQEVCV. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05963 290 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05963 290 Pfam Protein kinase domain 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05963 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Seca3g05963 290 CDD STKc_GSK3 2 265 IPR039192 -
Seca3g05963 290 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 287 - -
Seca3g05963 290 FunFam Shaggy-related protein kinase kappa 63 290 - -
Seca3g05963 290 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Seca3g05963 290 SMART serkin_6 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05963 290 SUPERFAMILY Protein kinase-like (PK-like) 3 284 IPR011009 -
Seca3g05963 290 Gene3D Transferase(Phosphotransferase) domain 1 79 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05963 Seca-Chr3 123952225 123954380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05963 4 284 MAP Kinase Gene Family AT3G59790 31.169 7.83e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g05963 Pkinase 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05963 K14502 - qsu:111995841 496.893