Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05962 ATGCCGTTGGGGCCGCACCACCTTCAACCACCGCAACCAGCACCTCTGCCGCTACCGCCACCTCAGCAGCAACAGCTGCAGTTGTTGCCACAACCGCAATCCGAGAATGACCCACTGAAGGCGGCGGCGACTAACGACATCTCTAGCATGGAGACCGATAAGGACATGTCAGCTAGTGTCTCGAAGGGTAATGATGCAGTCACGGGTCACATAATATCAACCACAATCGGAGGGAAAAATGGTGAACCTAAACAGACTATCAGTTACATGGCTGAACGTGTTGTTGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACCGGGGAGACATTTGCAATAAAGAAGGTCTTGCAGGACAAGCGGTACAAAAATCGTGAATTGCAGTTAATGCGTGTGATGGATCATCCAAATGTAATTTCCCTGAAGCATTGCTTCTTCTCTACAACAAGCAAGGATGATCTTTTTTTTAACTTGGTCATGGAATATGTCCCTGAGACAATGTACCGAGTTCTAAAGCACTACAATAGCATCAACCAAGGAATGCCCCTAATCTATGTTAAATTATATACATATCAAATCTTTAGGGCACTAACATATATCCATACTGTACTTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTCTGTGTAATATAGTAATTTTATGTCAGATCAAGGGTGAATCAAACATTTCGTACATAAGTTCGCGATACTATAGGGCCCCAGAACTAATATTTGGTGCAACAGAATATACAACTTCTATTGATATATGGTCTGCTGGTTGTGTCCTTGCGGAACTACTTCTAGGCCAGGTTAAACACTCTTGGAAGCTTATGCCCCAATGTTGCTACTTGCTCATACATATTCTTGGTACTCCGACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATATAGTTTCTCAATTCTCGCATACAAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCTTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTGTCGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGCCCAATGCTCGGCTACCTAATGGTCGTCCGCTGCCTCCCCTTTTCAACTTTAAACAAGAATTAGCTGGAGCACCCCCTGAAGTGGTCCACAAACTCATCCCAGACCATGTCAGGCAGCAAACTAGTATTGGCTTCCCATATCTGGCCAGTACATAA 1314 0.4399 MPLGPHHLQPPQPAPLPLPPPQQQQLQLLPQPQSENDPLKAAATNDISSMETDKDMSASVSKGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETFAIKKVLQDKRYKNRELQLMRVMDHPNVISLKHCFFSTTSKDDLFFNLVMEYVPETMYRVLKHYNSINQGMPLIYVKLYTYQIFRALTYIHTVLGVCHRDVKPQNILVDPLTHQVKLCDFGSAKVLCNIVILCQIKGESNISYISSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQVKHSWKLMPQCCYLLIHILGTPTREEIRCMNPNYIVSQFSHTKAHPWHKVFHKRMPLEAIDLASRLLQYSPSLRCRALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGAPPEVVHKLIPDHVRQQTSIGFPYLAST. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05962 437 FunFam Shaggy-related protein kinase kappa 169 424 - -
Seca3g05962 437 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 53 426 - -
Seca3g05962 437 FunFam Glycogen synthase kinase-3 beta 73 168 - -
Seca3g05962 437 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g05962 437 SUPERFAMILY Protein kinase-like (PK-like) 88 405 IPR011009 -
Seca3g05962 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Seca3g05962 437 ProSiteProfiles Protein kinase domain profile. 89 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05962 437 MobiDBLite consensus disorder prediction 27 62 - -
Seca3g05962 437 CDD STKc_GSK3 84 384 IPR039192 -
Seca3g05962 437 Gene3D Phosphorylase Kinase; domain 1 74 168 - -
Seca3g05962 437 MobiDBLite consensus disorder prediction 1 62 - -
Seca3g05962 437 ProSitePatterns Protein kinases ATP-binding region signature. 95 119 IPR017441 GO:0005524
Seca3g05962 437 Pfam Protein kinase domain 89 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05962 437 SMART serkin_6 89 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05962 437 Gene3D Transferase(Phosphotransferase) domain 1 169 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05962 Seca-Chr3 123894252 123898556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05962 89 425 MAP Kinase Gene Family AT1G73670 32.184 2.37e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g05962 Pkinase 2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05962 K14502 - mnt:21393664 647.121