Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05960 ATGGCAAGAGACAGAGCCACCGCACTCGCTGGGTCCAACAACCCTTCACCCCCAAACGCCAAGGAGATCCGTTACAGAGGCGTCAGGAAGCGTCCATGGGGACGTTACGCCGCTGAGATTCGCGATCCCGGGAAGAAAACCCGTGTCTGGCTCGGCACCTTCGACACCGCTGAAGAGGCGGCGCGGGCCTATGACACGGCGGCGCGTGAGTTCCGCGGCGCCAAGGCTAAGACCAATTTTCCCACCCCTGCTGAGGTCATCAACAACAACAACACTCGCTCTCCTAGCCAGAGCAGCACCCTTGAATCTTCCTCTCCACCGCCGCCGCCTCCGCCGCCGCTGGACCTCACCCTCACACCGCTGTCCGCCGCCGTTGGCGGCGCTTCCATGGCGTTCCAGATGGCACGTCCCGCGTTGTTCTTCGACGCGTTTGCTCGGGCACAGAACGCGTTGAGCGTGAGTCGCCGTGAGATGTGCTTGTTCGACCGTCCTGTTGCTGATTTTCACCGCGCCGTCGTCCCAGCCGCCGCCGCCGCCGCTCCGAGTGACTCTGACTCTTCCTCCGTCGTGGACTACGAGCGTGTCCCGCCTCACAGAATCTTGGATCTTGATCTGAACGCCCCTCCTCCACCAGAGCTTGTCTGA 645 0.6279 MARDRATALAGSNNPSPPNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPAEVINNNNTRSPSQSSTLESSSPPPPPPPPLDLTLTPLSAAVGGASMAFQMARPALFFDAFARAQNALSVSRREMCLFDRPVADFHRAVVPAAAAAAPSDSDSSSVVDYERVPPHRILDLDLNAPPPPELV. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05960 214 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Seca3g05960 214 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Seca3g05960 214 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca3g05960 214 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Seca3g05960 214 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Seca3g05960 214 MobiDBLite consensus disorder prediction 102 116 - -
Seca3g05960 214 MobiDBLite consensus disorder prediction 82 101 - -
Seca3g05960 214 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g05960 214 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca3g05960 214 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Seca3g05960 214 MobiDBLite consensus disorder prediction 75 116 - -
Seca3g05960 214 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Seca3g05960 214 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Seca3g05960 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05960 Seca-Chr3 123857163 123857807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05960 12 142 AP2-EREBP Transcription Factor Family AT3G15210 60.417 7.16e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g05960 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05960 K09286 - gmx:100500601 217.238