Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05955 ATGGATAATAACTACTACCACCAACATCACTTGGACAAAACTGATGCAAATTTGCCTCCTGGCTTTCGGTTCCACCCTACTGATGAAGAACTCATCACCTATTATCTTCTCAAGAAGGTTCTTGACAACACCTTCACTGGAAGAGCTATAACTGAAGTTGATCTTAACAAGTGTGAGCCTTGGGAGCTTCCTGAGAAAGCTAAGATGGGTGAAAAGGAATGGTATTTCTTTAGCCTACGTGATAGGAAGTACCCAACTGGGCTACGTACAAATAGAGCCACAGAAGCTGGTTATTGGAAAGCCACTGGGAAAGATAGAGAGATTTATAGCTCAAAATCTTGCTCCCTTGTTGGCATGAAGAAAACCCTTGTTTTCTACAGAGGCAGAGCTCCTAAAGGGGAAAAAAGCAACTGGGTCATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCACTACCTCTCTAGGAACACCAAGGATGAGTGGGTCATATCTCGAGTGTTTCAGAAGAGTAGCACTGGAAATGGAAGCTCCACCATATCTGCTTCTACCACAAGTGGTTCCAAGAAATCAAGAATGAGTATTAGCATGAGCATGAGCACAACCTCTGCTAGTAACAGCATGAGTCTCTGCCCTGAACCAAGTTCTCCCTCTTCTTCAGTTTATCTTCCACCTCTTCTAGACTCTTCTCCTTACCCCAACACCAACCCCACCACCACAACCGCCGCCAGCACCGCCACATTCAACGACCGTCAAAGCTGTTCCTTTGACAGCACCCAAAGGGAGCACGTGTCCTGTTTCTCCACAATATCTGCAGCCACTGCCGCTGTTGTTTCCACAAATAACAACTTTATCAATGCAAGCTTCGACCCTTTTGCTTCTTCTGTTGACCCTTTTGCTCGTTTTCAAAGAAACGCTGGTTTCTCTACCTTCCCAAAGTTGTCTCTACAAGAAAACCTTCAGCTTCCTTTGTTTCTTCCCACGGCGGCGCAGCCCTTTCACGGTGGAGGTTCCGGTGACTTTCTCGGCTGCGGCACCGTTGGGGGATGGCCGGTGCCGGAGGAGCAAAGGGTGGCTGGTGGTGGTTCTAGCTTGGCATTGGGATCATCTGAGCTTGATTGCATGTGGGGCAACTATTGA 1140 0.4728 MDNNYYHQHHLDKTDANLPPGFRFHPTDEELITYYLLKKVLDNTFTGRAITEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKSCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNTKDEWVISRVFQKSSTGNGSSTISASTTSGSKKSRMSISMSMSTTSASNSMSLCPEPSSPSSSVYLPPLLDSSPYPNTNPTTTTAASTATFNDRQSCSFDSTQREHVSCFSTISAATAAVVSTNNNFINASFDPFASSVDPFARFQRNAGFSTFPKLSLQENLQLPLFLPTAAQPFHGGGSGDFLGCGTVGGWPVPEEQRVAGGGSSLALGSSELDCMWGNY. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05955 379 SUPERFAMILY NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
Seca3g05955 379 MobiDBLite consensus disorder prediction 171 198 - -
Seca3g05955 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 237 - -
Seca3g05955 379 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
Seca3g05955 379 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Seca3g05955 379 FunFam NAC domain-containing protein 100-like 27 174 - -
Seca3g05955 379 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05955 Seca-Chr3 123727618 123730138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05955 1 379 NAC Transcription Factor Family AT5G53950 50.985 8.88e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g05955 NAM 8.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05955 - - vun:114185732 479.944