Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05953 ATGGAATACATGGCTGGTGGCTCTGTTGCTGATCTACTCCAATCAGGTACCCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGCGACTTGCTGCATGCTATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTACTGACTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCCTTCTGGATGGCACCTGAGGTTATTCAGAATTCAGATGGATACAATGAGAAGGCAGATATCTGGTCTATGGGGATTACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCCATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCTCCACAGCTAGATGAGCATTTTTCTCGTCCATTGAAAGAATTTGTTTCATTGTGTTTGAAGAAGGTGCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGGAATGCTAGGAAGAATCCAAAGCTAGCAGAAAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGATTTGGAGACACCTAGAAGTGGCCCAAGAGGGGTAGGGGAGGGATCGGATACTATGAAGGTGGCTAGAGATTTAAGAGGTGAAGAAACTAATCGACCCAGCGATCAGGGTAAAACCATGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGAGTACTGGAACCTTTCGTAGTGTTTCAAGACCACCTCAGTTTAGGGAAAAGAAAACTGAAGTTTCACATAATCAGCTTACCCAAAGAAAAGCTCCAGAGAGTGGCTATCAAGGGGGATCTGCCTATAGAAGTGCACATAATGAGTCACTTGAAAGTTCCTTTGGAAAAGACCTCAGAGTTCCTCACCATGATGAGCATCTGGATAATCACCTTGAAGAGGATGAATTATCTGGGAATGGATCAGGAACTGTCGTTATTCGATCTCCAAAAGGATCAAGGCCATCTGTATTTCGTGACCAAAGCTCCCAGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGCGGAACTGTTGTATTACGTGGCCAGCATGATGATTCTGATTCTTCATGGACATCAAAGTCCCGGCCGGGACTTCGTGACAGAAATTCAAATTCGTCACTGGAAGATAGTGCAGCAAACCTTGCTGAGGCAAAAGCTGCTATCCAAGCAGGGCTAAGGAAAGGGAATGCTCGAGAGAGATTTCCCCGGGGAAAAGTGAACAGTGATATACAGGAACGCAAGAGAGATCAAATGACTAGCAGCTCTGATTTTTCGAGACCATATCGTGAACAAACTGATGCACAAAAGGGCATGTTAAAATCACATTATGCTAGTGATGATGAAGAAAGTGCTAAAATAATATCATCGTCGGTGCCGTTATCAGTTTTGCTTATTCCTTCAATAAAAGAGGCCATTGCTGATGATCCAGAAGGGACAATTGTGAAGGCAGTTATCAATTCTTTAATAAACATGGAGGGCACAAAGCCTAGATCCTGTGATGTTCTTGTCAAAAAATTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTGAAGGATCTACAGGGACTGGCAGGCCAACTATTCAGCAAGACCAAGTCAGCTGAAGAAACCCGAAGTGCAGAGAAGAAACAACAGAACAAGGAACTTCATTCGAATAGCAATTTAAGCCCACTCGCTAGATTTCTTCTTTCAAGATGGCAAGGCCAAACCTCACGGGATCTAAACCCATCTTGA 1827 0.434 MEYMAGGSVADLLQSGTPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSMGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPLKEFVSLCLKKVPAERPSAKELLKDRFIRNARKNPKLAERIRERPKYQIKEDLETPRSGPRGVGEGSDTMKVARDLRGEETNRPSDQGKTMKSAGWDFSIGGSQSTGTFRSVSRPPQFREKKTEVSHNQLTQRKAPESGYQGGSAYRSAHNESLESSFGKDLRVPHHDEHLDNHLEEDELSGNGSGTVVIRSPKGSRPSVFRDQSSQSSSSYASFEDASSSGTVVLRGQHDDSDSSWTSKSRPGLRDRNSNSSLEDSAANLAEAKAAIQAGLRKGNARERFPRGKVNSDIQERKRDQMTSSSDFSRPYREQTDAQKGMLKSHYASDDEESAKIISSSVPLSVLLIPSIKEAIADDPEGTIVKAVINSLINMEGTKPRSCDVLVKKLLQRLASSKEDSLKDLQGLAGQLFSKTKSAEETRSAEKKQQNKELHSNSNLSPLARFLLSRWQGQTSRDLNPS. 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05953 608 FunFam Serine/threonine-protein kinase 24 4 205 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 186 208 - -
Seca3g05953 608 Gene3D Transferase(Phosphotransferase) domain 1 1 208 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 423 465 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 324 406 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 335 406 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 186 307 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 218 236 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 565 579 - -
Seca3g05953 608 Pfam Protein kinase domain 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05953 608 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05953 608 SUPERFAMILY Protein kinase-like (PK-like) 1 213 IPR011009 -
Seca3g05953 608 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05953 608 MobiDBLite consensus disorder prediction 247 263 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 279 303 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 561 585 - -
Seca3g05953 608 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 561 - -
Seca3g05953 608 MobiDBLite consensus disorder prediction 426 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05953 Seca-Chr3 123657079 123668103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05953 1 605 MAP Kinase Kinase Kinase Kinase AT3G15220 63.097 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Seca3g05953 Pkinase 8.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05953 K08838 - gmx:100815042 998.423