Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05950 ATGTCAAAGCGCATAACTCATGGCTTTCACTTGGTAAAGGGAAGATCATATCATGCCATGGAGGATTATGTTGTTGCTCAATTTAAGCAAGTTGATAACAATGAATTGGGTTTGTTTGCAATATTTGATGGCCACGCGGGTCACAATGTACCTGATTACTTGCGGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGAAAGAACCTGCAAATGCTGTCAAGAGAGCATATAGTATAACTGATTCTAGTATTTTAGAGAAATCAGGTGAATTGGGAAGAGGGGGTTCAACTGCAGTTACGGCAATATTGATCAATTGTCAGAAGTTAGTAGTAGCCAATATCGGGGATTCTCGAGCTGTCTTATGCAAGAAAGGTGTGGCCAAACAACTATCAGTGGATCATGAGCCAATCACAGAACATGAGGATATAAAAAATAGAGGTGGTTTTGTATCAAGATTTCCAGGGGATGTTCCTCGGGTTGATGGTCGGCTAGCAGTGTCAAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCACATGTGACAGTGGAGGTGATAAATGATGATGCAGAGTTTATTATATTAGCCAGTGATGGATTATGGAAGGTAATGTCAAATCAAGAAGCAGCTGATTTTATCAAAGATATAAAGGATGCTCGGGCTTCAGCAAAGCGCCTTACTGAAGAAGCACTTAACAGGAAAAGCACTGATGATATCTCCTGCATTGTTGTGAAATTTCAGTGA 765 0.4026 MSKRITHGFHLVKGRSYHAMEDYVVAQFKQVDNNELGLFAIFDGHAGHNVPDYLRSHLFDNILKEPDFWKEPANAVKRAYSITDSSILEKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCKKGVAKQLSVDHEPITEHEDIKNRGGFVSRFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPHVTVEVINDDAEFIILASDGLWKVMSNQEAADFIKDIKDARASAKRLTEEALNRKSTDDISCIVVKFQ. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05950 254 CDD PP2Cc 13 253 IPR001932 -
Seca3g05950 254 ProSiteProfiles PPM-type phosphatase domain profile. 6 253 IPR001932 -
Seca3g05950 254 Coils Coil 216 236 - -
Seca3g05950 254 PANTHER PROTEIN PHOSPHATASE 7 253 IPR015655 GO:0004722|GO:0006470
Seca3g05950 254 Gene3D - 3 254 IPR036457 -
Seca3g05950 254 ProSitePatterns PPM-type phosphatase domain signature. 38 46 IPR000222 GO:0043169
Seca3g05950 254 Pfam Protein phosphatase 2C 19 246 IPR001932 -
Seca3g05950 254 SUPERFAMILY PP2C-like 4 253 IPR036457 -
Seca3g05950 254 SMART PP2C_4 4 251 IPR001932 -
Seca3g05950 254 FunFam Probable protein phosphatase 2C 39 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05950 Seca-Chr3 123469790 123471650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05950 1 254 PP2C-type Phosphatase Gene Family AT3G15260 76.378 1.41e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05950 K17506 - gmx:100500617 465.692