Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05947 ATGGAGAGGAAGCATAAGGCAATTGAGAAGGTGAGGAAGGACAACACATTTAAAGAAATAGAAGAGGAGGAGGATGAAAGTGGTGGTGGTGATGATGGTGTTCCTGCAGAAGATGAGAAGAAGAAAGGTGCTGATGTGAGTGGGAGGAAAGGGTCAAGTTGGGGTGGAAGAGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGATGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCATCATCTGTTGTGGTTGCAGGGCTCAGCCAGAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGTAGGAGACGCTTAGCCAGACACAATGAGCGGCGCAGGAAAATCAATGCTGAAACTTGCAAAAGCATCAAAGTGAAGTGCCCCACGGAAAGCCAATTCAGTAATGGTGAATACTGGGGGAGAATTCAGATGAACATGGAAAGGAGTTCTGGTTACAAGAACTTGTTCCATATCAGATGA 546 0.467 MERKHKAIEKVRKDNTFKEIEEEEDESGGGDDGVPAEDEKKKGADVSGRKGSSWGGRVSPPSCQAERCDADLTVAKRYHRRHKVCELHSKASSVVVAGLSQRFCQQCSRFHEVAEFDEAKRSCRRRLARHNERRRKINAETCKSIKVKCPTESQFSNGEYWGRIQMNMERSSGYKNLFHIR. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05947 181 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 138 IPR044817 GO:0003677
Seca3g05947 181 MobiDBLite consensus disorder prediction 1 63 - -
Seca3g05947 181 MobiDBLite consensus disorder prediction 33 47 - -
Seca3g05947 181 FunFam Squamosa promoter-binding-like protein 14 55 124 - -
Seca3g05947 181 Pfam SBP domain 63 136 IPR004333 GO:0003677
Seca3g05947 181 Gene3D - 54 124 IPR036893 GO:0003677|GO:0005634
Seca3g05947 181 Coils Coil 120 140 - -
Seca3g05947 181 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Seca3g05947 181 SUPERFAMILY SBT domain 61 141 IPR036893 GO:0003677|GO:0005634
Seca3g05947 181 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05947 Seca-Chr3 123441020 123442443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05947 46 141 SBP-box Gene Family AT1G53160 67.010 3.44e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g05947 SBP 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05947 - - gmx:100305703 226.868