Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05944 ATGGTGCTTCTCAGATGTTCCTCGGTGACACTTGTGCAGTGGTGTTTCTTGGCGTGCTTACTTTGCTTGTCTTTGGGTCTTGACAATCAAACTCCATCCTGTGACCCGCATGATTTTTCAGCCCTGAAGGAGTTTGCTGGCAACCTTACAAATGGCTCTATCATCACAGCATGGTCCAATGATATTGTCTGCTGCAACTGGATTGGAGTTATCTGTGATAATGTGACTGGGGCTAATGGAGCAGCTGCTAGTAGAGTGACCAAATTGATCCTCCCTGGAATGAGTCTCAATGGGACAATTTCACCCTCTTTAGCACAGCTGGATCAGCTCAAAGTGCTGAATCTTTCATTTAATCATCTTGGAGGTGGATTGCCTGTAGAGTTCTCCAAATTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCAGGACCTGTTACTGAGTCACTTTCTGGTTTGCAGTCCATTGAAGTATTGAATATTTCTAGTAATTCATTTGATGGAGACCTCTTCCAGCTTGGGGAATTCCCACATCTCCTTGCCCTCAACATGAGTAACAATTCATTCACTGGCAGATTCATTTCTCAAATTTGCAGTTCTTCCAAGGATCTTCATACCCTTGATTTATCTGCAAATCATTTTGGTGGTGGTCTTGAAGGCTTGGACAACTGCACCACATCTCTCCAACAGTTGCATTTGGATTCCAATTCATTTTCTGGCACCCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGCAATTCTCAGTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAACCAACTAAGTCCTATTGATCTTGATTTCAGAGGGTTGTCTAATCTTTGCTCACTTGATCTTGCTAGTAATCATTTTATTGGACCCCTTCCTAGTTCTTTGTCCTATTGCCAGGAATTGAAAGTTTTAAGCCTTGCTAGGAATAGTTTAAATGGCACTATCCCTGAGAACTATGCCAACCTCACTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCTTAGAGAACTTATCTGGGGCACTGTCTGTTCTACAGCAGTGCAAAAATCTCACCACTCTTGTCCTCACTAAGAATTTCCATGGTGAGGAAATTCCAGAAAGTGTACCAGCAGGATTTGAGAGTCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATGTTCCTTCTTGGCTATCAGAATGCAGGAAATTGGCAGTGCTTGATTTGTCTTGGAACCATTTGAATGGTAGTATTCCTTCTTGGATTGGTCACATGGACAGTTTGTTCTACTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAGGGGCCTCATGTGCTCAAATTGTAATAGAGCGAATCTCGCAGCTATTGCAGCCAATCCTCTCTTTGTTAAGAGGAACACGAGTGCTAGTGGGCTGCAATATAACCAGGCCTCAAGTTTCCCTCCATCCATTTACTTGAGCAATAACATGTTAAGTGGAAATATATGGCCTGAAATTGGTCGATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAACACTATTTCAGAGATGGAGAACTTGGAAACATTAGATTTATCTTATAATGATCTCTCTGGTGAAATCCCTCCATCATTTAACAACCTCACGTTCTTGGCAAAGTTCAGTGTGGCACATAATCACTTAGAAGGACCAATTCCAACAGGGGGGCAGTTTCTAAGCTTCCCTAGTTCAAGCTTTGAAGGCAATCTGGGGCTTTGTAGGGACATTGATTCTCCTTGCAAAATCATCAACAATATGAGGCCCAATATTTCTTCAGATTCATCCAGAAAATTTAGTCGAAGCAATGTCCTTGGCATAACAATTGGTATAGGGATAGGACTTGCACTGCTTCTTGCAATTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAGCCTATTGATAACTATGATGAGGAACTCAATAGTAGGCCACACAGGTTATCTGAAGCACTTGTTTCCTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAAGCAAACATTGTTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACCAAAGCAGCTGTCAAGAGACTTTCTGGGGACTGTGGTCAAATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTAGACATGGGAATGACAGATTGCTAATTTACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGGAAATTCAGTTCTAAATTGGGATGTAAGACTCAAGATTGCACAAGGCGCAGCGCGTGGATTAGCTTACTTGCACAAGGGGTGTGAACCATACATAGTTCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGGCTACTTCAACCTTATGATACTCATGTCACAACAGACTTAGTAGGAACATTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACTTTCAGGGGTGATGTTTATAGTTTCGGTGTTGTTCTTCTTGAGCTTCTTACTGGTAGAAGGCCAGTAGAAGTCATCAAGGGGAAAAATTGCAGGAATCTGGTGTCATGGGTTTTTCAGATGAAATCTGAAAACAAGGAGCAGGAAATTTTTGATCCAGTCATTTGGCAGAAGGATCGTGAGAAACAACTATTGGAAGTTCTTGCCATTGCTTGTAAATGTCTTGACCAAGATCCAAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGCTGTCAACAGTGA 2970 0.4145 MVLLRCSSVTLVQWCFLACLLCLSLGLDNQTPSCDPHDFSALKEFAGNLTNGSIITAWSNDIVCCNWIGVICDNVTGANGAAASRVTKLILPGMSLNGTISPSLAQLDQLKVLNLSFNHLGGGLPVEFSKLKQLKFLDVSHNMLSGPVTESLSGLQSIEVLNISSNSFDGDLFQLGEFPHLLALNMSNNSFTGRFISQICSSSKDLHTLDLSANHFGGGLEGLDNCTTSLQQLHLDSNSFSGTLPDSLYSMSALEQFSVSANNLSGQLSNQLSPIDLDFRGLSNLCSLDLASNHFIGPLPSSLSYCQELKVLSLARNSLNGTIPENYANLTSLLFVSLSNNSLENLSGALSVLQQCKNLTTLVLTKNFHGEEIPESVPAGFESLMVLALGNCGLKGHVPSWLSECRKLAVLDLSWNHLNGSIPSWIGHMDSLFYLDFSNNSLTGEIPKSLTELRGLMCSNCNRANLAAIAANPLFVKRNTSASGLQYNQASSFPPSIYLSNNMLSGNIWPEIGRLKALHVLDLSRNNITGTIPNTISEMENLETLDLSYNDLSGEIPPSFNNLTFLAKFSVAHNHLEGPIPTGGQFLSFPSSSFEGNLGLCRDIDSPCKIINNMRPNISSDSSRKFSRSNVLGITIGIGIGLALLLAIILLRMSKRDEDKPIDNYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDGNSVLNWDVRLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPVIWQKDREKQLLEVLAIACKCLDQDPRQRPSIEVVVSWLDSVRFDGCQQ. 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05944 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Seca3g05944 989 FunFam Phytosulfokine receptor 1 671 783 - -
Seca3g05944 989 FunFam Tyrosine-sulfated glycopeptide receptor 1 279 613 - -
Seca3g05944 989 ProSitePatterns Protein kinases ATP-binding region signature. 714 736 IPR017441 GO:0005524
Seca3g05944 989 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Seca3g05944 989 SUPERFAMILY RNI-like 89 454 - -
Seca3g05944 989 SMART serkin_6 708 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05944 989 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Seca3g05944 989 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Seca3g05944 989 Gene3D Phosphorylase Kinase; domain 1 671 783 - -
Seca3g05944 989 Pfam Protein kinase domain 709 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05944 989 ProSiteProfiles Protein kinase domain profile. 708 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05944 989 SUPERFAMILY L domain-like 484 620 - -
Seca3g05944 989 SUPERFAMILY Protein kinase-like (PK-like) 690 979 IPR011009 -
Seca3g05944 989 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 345 979 - -
Seca3g05944 989 PRINTS Leucine-rich repeat signature 518 531 - -
Seca3g05944 989 PRINTS Leucine-rich repeat signature 539 552 - -
Seca3g05944 989 SMART LRR_typ_2 107 130 IPR003591 -
Seca3g05944 989 SMART LRR_typ_2 539 562 IPR003591 -
Seca3g05944 989 SMART LRR_typ_2 429 453 IPR003591 -
Seca3g05944 989 SMART LRR_typ_2 282 306 IPR003591 -
Seca3g05944 989 SMART LRR_typ_2 330 353 IPR003591 -
Seca3g05944 989 SMART LRR_typ_2 515 538 IPR003591 -
Seca3g05944 989 SMART LRR_typ_2 131 154 IPR003591 -
Seca3g05944 989 CDD STKc_IRAK 714 980 - -
Seca3g05944 989 FunFam Leucine-rich repeat receptor-like kinase 37 157 - -
Seca3g05944 989 Gene3D Ribonuclease Inhibitor 345 612 IPR032675 -
Seca3g05944 989 Gene3D Ribonuclease Inhibitor 155 344 IPR032675 -
Seca3g05944 989 Gene3D Ribonuclease Inhibitor 38 154 IPR032675 -
Seca3g05944 989 FunFam Leucine-rich repeat receptor-like protein kinase 784 988 - -
Seca3g05944 989 Gene3D Transferase(Phosphotransferase) domain 1 784 986 - -
Seca3g05944 989 ProSiteProfiles Leucine-rich repeat profile. 541 563 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05944 Seca-Chr3 123420732 123423896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05944 110 985 Receptor kinase-like Gene Family AT1G55610 35.269 2.06e-155 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca3g05944 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05944 - - gmx:100797812 1433.7