Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05940 ATGGAGCTTCAGAAACATTTTTGCCTCTTTTTATTTCTCTTTAGTTTCCTCTCAGGCTCTCAAGCTTATACATTTTATGTTGGTGGAAAAGATGGGTGGGTTTTGAACCCTTCTGAGAATTACAATCATTGGGCTGAGAGGAACAGGTTCCAAGTCAGTGACACTCTTGTTTTTAGGTACAAGAAGGGATCAAACTCTGTGTTGGTGGTGAACAAGGATGATTATGATCAATGCAACAAGAAGAACCCTATCAAGAAGTTAGAGGATGGTGACTCTGAGTTTCAGTTTGATCGGTCAGGTCCTTTTTTCTTCATCAGTGGCAAAGATGATAATTGTGAAAAGGGTCAGAAACTGATTATTGTGGTAATGGCTGTGAGAGAACAACAGCATCATAATCCACCTCCTTTACCATATGTTCCAATTCCTCCCAAAGCTCCTTCCCCTCCTTATGTTTCAACACCTCCACATACACCTCCTGTGATTCATCCTCCCTATGTTCCAACTCCACCAAAAGCTCCATCCCCTGTGAACCACCCTCCATATGTTCCAACACCACCACAAACCCCTTCCCCTGTTTATAGTCCTCCTTATGTTCCAACACCTCCAAAAACACCATCTCCTGTTTATAGTCCTCCCTATGTTCCTACTCCTCCAAAATCTCCCTCACCTATTAATCCACCTTATGTTCCTACACCTCCAAAAACACCATCTCCTGTTTACAGTCCTCCCAGTGTCCCTACTCCTCCAAAATCTCCCTCACCTATTCATCCACCATATGTCCCAACACCTCCAAAAACACCTTCCCCTGTTTACAGTCCTCCCAATGTCCCTACTCCTCCAAAAGCTCCCTCACCTATTCATCATCCACCATATGTACCAATTATACCTCCAAAAACACCTCCTGGTTATAGTCCTCCCAGTGTTCCTACTCCTCCAAAATCCCCTTCCCCTATTCATCCACCCTATGTACCAATCATACCTCCAAAAACACCTTCTCCTGTGTATAGTCCTCCCAATGTTCCTACTCCACCAAAAGCTCCTTCACCTATTCATCCACCTTATGTTCCCATTACACCTCCAAAATCACCTTCTCCTGGTTATAGTCCTCCCAATGTTCCTACTCCTCCAAAGGCTCCTTCACCTACCAATCATCCACCCTTTGTTCCAATACCTCCAAAAACTCCATCTCCTTCTTATAGTCCCCCCAATGTTCCTACTCCACCCAAAGCTCCTTCCCCTGGCAATCAGCCTCCCTATGTACCAACTCCTCCAAAAACTCCTTCTCCTATTTCTCAGCCTCCCTACACTCCAACTCCTCCAAAAACTCCCTCTCCTGTTTATAGTCCTCCCAGTGTTCCTACTAATCCAAGAGCTCCTTCCCCAGGCCAACACACTCCATATATTCCAACTCCTCCAACAACTCCCTCTCCTGTTTATAGTCCTCCCAGTGTTCCTACTACTCCAAGAGCTCCTTCCCCAGGCCAACACACTCCATATATTCCAACACCTCCAAAAACTCCCTCTCCTTCTTATAGTCCTCCTAATGTTCCTACTCCTCCAAAAGCCCCTTCCCCTGGCCAACACACCCCATATGTTCCAATTCCTCCAAAAACCCCTTCTCCCATTTCTCAACCTCCATATATTCAAACACCTCCAAGCACTCCCTCTCCAATTTCCCAACCTCCTTATATTCCAACACCTCCAAAAACCCCTTCTCCCATATCCCAACCTCCCTATGTTCAAACACCTCCAAGCACTCCCTCTCCAATTTCCCAACCTCCCTATATTCAAACACCTCCAAACACTCCTTCCCCAATTTCTCAGCCTCCCTATATTCAAACACCTCCAGGCACCCCTTCTCCCATTTCCCAACCTCCATATATTTCAACACCTCCAAACACTCCTTCCCCAATATCTCAACCACCCTACATCCATACACCTCCAAACACTCCTTCTCCATATTCTCAGCCACCCTATCTCCCAACTCCTCCAAAATCCACTTCCCCCATCTCTCAACCCCCAGTAGCACTAACACCCTCTGGGATAGCACCAGTTTCACCATCACCACTAACACCTTTATCTCCATACCCACCAGCCAACCCTCCCTCAACATCACTCTCACCATCTCAGGCACCTTTAGTTTCTCCGACAATCACTCCGGCGAGTGCTCCGGTGCCGGCCACAACATCACCACCGTCAATGGCCCCATCAGCCACCACTCCAGCGGCATCACCTCCGGCGTCCCTTCCGGCAGCAGCAACTCCATCACCGTCGTCCACGACTCCGGGATCACCCAAAACGCCATCGTCGTCTAATGAAACGGCACCAGCCAGACCAAACGGAGCGTCGTCTGCAACTCCTTCAGGATTATGGGTGTATTCACTTACTATTTTGGTCGGTGCTGCTCTCACCACTATTCTTGGATAG 2427 0.4763 MELQKHFCLFLFLFSFLSGSQAYTFYVGGKDGWVLNPSENYNHWAERNRFQVSDTLVFRYKKGSNSVLVVNKDDYDQCNKKNPIKKLEDGDSEFQFDRSGPFFFISGKDDNCEKGQKLIIVVMAVREQQHHNPPPLPYVPIPPKAPSPPYVSTPPHTPPVIHPPYVPTPPKAPSPVNHPPYVPTPPQTPSPVYSPPYVPTPPKTPSPVYSPPYVPTPPKSPSPINPPYVPTPPKTPSPVYSPPSVPTPPKSPSPIHPPYVPTPPKTPSPVYSPPNVPTPPKAPSPIHHPPYVPIIPPKTPPGYSPPSVPTPPKSPSPIHPPYVPIIPPKTPSPVYSPPNVPTPPKAPSPIHPPYVPITPPKSPSPGYSPPNVPTPPKAPSPTNHPPFVPIPPKTPSPSYSPPNVPTPPKAPSPGNQPPYVPTPPKTPSPISQPPYTPTPPKTPSPVYSPPSVPTNPRAPSPGQHTPYIPTPPTTPSPVYSPPSVPTTPRAPSPGQHTPYIPTPPKTPSPSYSPPNVPTPPKAPSPGQHTPYVPIPPKTPSPISQPPYIQTPPSTPSPISQPPYIPTPPKTPSPISQPPYVQTPPSTPSPISQPPYIQTPPNTPSPISQPPYIQTPPGTPSPISQPPYISTPPNTPSPISQPPYIHTPPNTPSPYSQPPYLPTPPKSTSPISQPPVALTPSGIAPVSPSPLTPLSPYPPANPPSTSLSPSQAPLVSPTITPASAPVPATTSPPSMAPSATTPAASPPASLPAAATPSPSSTTPGSPKTPSSSNETAPARPNGASSATPSGLWVYSLTILVGAALTTILG. 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05940 808 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Seca3g05940 808 PANTHER BLUE COPPER PROTEIN 23 170 IPR039391 GO:0009055
Seca3g05940 808 MobiDBLite consensus disorder prediction 210 670 - -
Seca3g05940 808 CDD OsENODL1_like 23 123 IPR041846 -
Seca3g05940 808 FunFam Early nodulin-like protein 1 22 127 - -
Seca3g05940 808 MobiDBLite consensus disorder prediction 685 705 - -
Seca3g05940 808 ProSiteProfiles Phytocyanin domain profile. 23 124 IPR003245 GO:0009055
Seca3g05940 808 MobiDBLite consensus disorder prediction 706 724 - -
Seca3g05940 808 MobiDBLite consensus disorder prediction 161 198 - -
Seca3g05940 808 Gene3D - 21 127 IPR008972 -
Seca3g05940 808 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Seca3g05940 808 MobiDBLite consensus disorder prediction 210 787 - -
Seca3g05940 808 MobiDBLite consensus disorder prediction 753 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05940 Seca-Chr3 123309979 123312520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05940 3 128 Phytocyanin Superfamily AT5G53870 57.692 1.51e-53 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05940 - - gmx:100809181 224.172