Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05913 ATGGGTTGCATGTGTTGCAAGCCCTCTGCCATTGAGGATAGTAAGGAGAGCCCAAGGGAGCGTTTATCAAACAAAGCTGTATCTAGGGGAGCTTCATCAAGGAGGGAGGAAGCATATAAGGTAAAGGATAGGTATGATAACAATGATGGGAGAACTGCATTGATTGATAAGCAAGGGCAAGGGAATGGCTCTGTTCGAGTGCAAGGTGATAATTTTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCAACATCCAGGGATTGGTAGTGTTCCCAAAGCCATGGAAGGAGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGCTGCCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGCCAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAAGAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCCTGGTTACATCAAGGATGTCATGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCCGTGGTGTACTGCACCGTGACATCAAGGGTTCCAATCTCTTGATTGACAACAATGGAATCTTAAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTCGATCCCAATCAAATTCAGCCTCTGACAAGCCGAGTTGTCACCCTTTGGTATAGGCCACCAGAGCTTTTACTTGGAGCTACTTACTATGGCACTGCTGTAGATTTATGGAGTACTGGTTGCATACTTGCTGAGCTGTATGCTGGCAAGCCTATAATGCCTGGTAGAACTGAGGTGGAACAATTACATAAAATTTTTAAACTTTGTGGTTCGCCTTCCGAGGAATATTGGAGAAAATCAAAATTGCCTCATGCAACAATATTTAAGCCTCAACAACCCTATAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCTGCACCTGCAATAGAACTGATAGAGATCCTATTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCTTTAAAGAGTGAGTTCTTCTCAATAAAGCCTCTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGATGCTAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGGCATGATCCTGAGAGAAGAGGAGTAAGAGAATCTCGAGCAATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAAGAGACAAGGGCAAATTAATTCTAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGACCCGCCTAGACCATCCCAAGTTGTAGAAGTAAGTGCAGATCCCCAGGTACATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGCACTGCATGGGCTAAAGCTGGGAAGAACCAGGAAGATGCTCCAAAAATTTCAATGGGGGGTGACTTATCAACAGTCTCAGGCTTAGTTGCAGCCAGGAGGAGTATGTTGTCTGATGATCGCAGAGATAGGTCTGGATCATCACAATCGGACGCTCCAAAACTAATTGCCAGGTTCCCAGGATCTTTCAAGGAGGCCTCTGAATCATTTACGCAACAGGATCAGAAGCATCATGTACATGCTCCTCAAAAGGAAGAAGGGAGAGGCGGCAACAAAGATCCAAATCTTGTTGGCTATGGTTCCAAGGGTTATAAAATTCATTATTCCGGTCCATTACTAGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCACGACCGCCAAATTCAGGAGGCAGTTAGAAGAGCACGTCTGGACAAGGCAAAAATGAGAAGACTCCAAGCTGAGGGGAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2109 0.4486 MGCMCCKPSAIEDSKESPRERLSNKAVSRGASSRREEAYKVKDRYDNNDGRTALIDKQGQGNGSVRVQGDNFERKREKMEYAVAQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIEILLSIDPADRGTSASALKSEFFSIKPLPCDPSSLPKYPPSKEFDAKVRDEDARRQGAAGSKGQRHDPERRGVRESRAIPAPDANAELVLSMQKRQGQINSRSEKFNPHPEEVASGFPIDPPRPSQVVEVSADPQVHQHKRASHSGPLTHRTAWAKAGKNQEDAPKISMGGDLSTVSGLVAARRSMLSDDRRDRSGSSQSDAPKLIARFPGSFKEASESFTQQDQKHHVHAPQKEEGRGGNKDPNLVGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05913 702 CDD STKc_CDK9_like 128 412 - -
Seca3g05913 702 FunFam probable serine/threonine-protein kinase At1g54610 115 210 - -
Seca3g05913 702 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Seca3g05913 702 FunFam probable serine/threonine-protein kinase At1g54610 211 452 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 7 67 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 53 67 - -
Seca3g05913 702 SMART serkin_6 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05913 702 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05913 702 MobiDBLite consensus disorder prediction 482 501 - -
Seca3g05913 702 Gene3D Transferase(Phosphotransferase) domain 1 211 451 - -
Seca3g05913 702 Pfam Protein kinase domain 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05913 702 PANTHER CELL DIVISION PROTEIN KINASE 126 418 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 422 474 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 574 637 - -
Seca3g05913 702 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Seca3g05913 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Seca3g05913 702 Coils Coil 669 689 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 30 51 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 431 466 - -
Seca3g05913 702 MobiDBLite consensus disorder prediction 609 630 - -
Seca3g05913 702 SUPERFAMILY Protein kinase-like (PK-like) 122 414 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05913 Seca-Chr3 122688603 122696225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05913 120 457 Core Cell Cycle Gene Families AT5G10270 52.260 1.63e-118 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca3g05913 Pkinase 2.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05913 - - gmx:100792173 1296.18