Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05896 ATGAGTACAGTTTCTCAAGCCTTTGCTCCACAAGCTGCGCCTGTCCCTTCTCTTACATTTTCATATTTTATTCTTAATGCTTCTAATGTGATTTTAATCTTCTTCTTATGTCTCTGTATTGCCACCATGCTTTCAACAGTAGTTGTTCTTCTTCTATTAAAAATCTGTGAATATATATCTGATGCTCTTCTTGAAACACTTGAGGTTGATATTGAAGAAGGAAGAATAAGGACTTTGGTATTTAGATCTTCTTTGACATACCAAGCTGCTTTGAATCAAATAAATGGTAGTAGGGAAAGATTACACACACATATACAAGGTTCTGAGACAAGATCAATTGATAAACAGACCTTAATCAAACTGCCACAGCATGTAATTTATGGACAAGAACAAGATGAGTTAAGAACATTTTGTAGTGATTGTGTCATATGTTTGGAGAGCTTCATCTCTGGGGAATCCTGCCAAAGTCTCCCTCTGTGCAATCACCTATTTCATTCATATTGCATAAAGCATTGGCTTAAGGACAATGTCACTTGCCCAGTTTGTCGAAATTGTTTATTAGAAACATGA 570 0.3561 MSTVSQAFAPQAAPVPSLTFSYFILNASNVILIFFLCLCIATMLSTVVVLLLLKICEYISDALLETLEVDIEEGRIRTLVFRSSLTYQAALNQINGSRERLHTHIQGSETRSIDKQTLIKLPQHVIYGQEQDELRTFCSDCVICLESFISGESCQSLPLCNHLFHSYCIKHWLKDNVTCPVCRNCLLET. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05896 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 187 IPR013083 -
Seca3g05896 189 Pfam Ring finger domain 140 183 IPR001841 -
Seca3g05896 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 28 187 - -
Seca3g05896 189 SMART ring_2 141 182 IPR001841 -
Seca3g05896 189 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Seca3g05896 189 SUPERFAMILY RING/U-box 140 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05896 Seca-Chr3 122129243 122129812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05896 32 189 C3H Transcription Factor Family AT1G53010 29.518 1.32e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05896 - - pvu:PHAVU_005G065200g 197.593