Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05895 ATGGCTGAGTTCACCGAATTGTTTCCCTTAGGCAAGCAATTAGATGGTTTAATGAACATGTATGTGTATATCATCACTTTTGATCTCCCAACTTTCATCGTTGTTTGTGTCATAGTCACTCTGTTCTTCTTCATCTTTTATCAAATTCTCTACGGTTTATTCTATTGGTTCATGGAAATGAGGCCGGATGAATTACACGATCTTGAAGAAGGAACTCATATATCTTATGATGTCTCTAGTCCATCTCATCAGGTTACCATCTTTCATGCTCTTGTCCTTGGCAATTTACAGGCTTGGGCAATGTTAGTTGCATATGAAGAAGGAGATTTTGAAGAGAAACGAGGGAATATGCTTAGAGCTTTAAGGAAATTGCCTCCCTTGGTGAACTATGGAAGGCATGACATAGTAAGAAGTTGTAATGAGTGTGCCATTTGCTTGGAAGATTTCGAAGTAGGCCAATTCTGCCAAGTTTTTCCTGTATGCAATCATATTTTCCATTCAGATTGCATAGACAACTGGTTGCAGAAGAAATCAACATGTCCAATATGTCGTACTTGCATAGATTAA 567 0.381 MAEFTELFPLGKQLDGLMNMYVYIITFDLPTFIVVCVIVTLFFFIFYQILYGLFYWFMEMRPDELHDLEEGTHISYDVSSPSHQVTIFHALVLGNLQAWAMLVAYEEGDFEEKRGNMLRALRKLPPLVNYGRHDIVRSCNECAICLEDFEVGQFCQVFPVCNHIFHSDCIDNWLQKKSTCPICRTCID. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05895 188 SUPERFAMILY RING/U-box 141 187 - -
Seca3g05895 188 SMART ring_2 142 183 IPR001841 -
Seca3g05895 188 CDD RING-H2_PA-TM-RING 141 184 - -
Seca3g05895 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Seca3g05895 188 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Seca3g05895 188 Pfam Ring finger domain 140 184 IPR001841 -
Seca3g05895 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 185 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05895 Seca-Chr3 122115758 122116324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05895 24 184 C3H Transcription Factor Family AT1G53010 31.977 3.16e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05895 - - gmx:102660073 273.092