Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g05891 | ATGGAGAAGAAATCACTTGTTGGGTGGTGCTTCATCTTCCTTGTTCTCCTTGTTGCTCAAGAAATTGTTGTGCAAACCGAGGCAAGAACTTGTGAGAATCTGGCTAATACATACAGGGGTCCATGTTTCACCACAGCTAGCTGCGATGATCACTGTAAGAATAAAGAGCACTTGATTAGCGGCAGGTGCAGGGATGACTTTCGTTGTTGGTGCACCAGAAACTGTTAA | 228 | 0.4474 | MEKKSLVGWCFIFLVLLVAQEIVVQTEARTCENLANTYRGPCFTTASCDDHCKNKEHLISGRCRDDFRCWCTRNC. | 76 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g05891 | 75 | PANTHER | DEFENSIN-LIKE PROTEIN 1 | 3 | 72 | - | - | |
| Seca3g05891 | 75 | Pfam | Gamma-thionin family | 29 | 75 | - | - | |
| Seca3g05891 | 75 | SMART | gth_4 | 30 | 75 | IPR003614 | GO:0006952 | |
| Seca3g05891 | 75 | Gene3D | - | 29 | 75 | IPR036574 | - | |
| Seca3g05891 | 75 | SUPERFAMILY | Scorpion toxin-like | 29 | 75 | IPR036574 | - | |
| Seca3g05891 | 75 | ProSitePatterns | Gamma-thionins family signature. | 29 | 52 | IPR008176 | GO:0006952 | |
| Seca3g05891 | 75 | CDD | Knot1 | 40 | 72 | IPR003614 | GO:0006952 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g05891 | Seca-Chr3 | 121949357 | 121952430 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g05891 | 11 | 75 | Plant Defensins Gene Families | AT2G02130 | 39.394 | 2.78e-11 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g05891 | - | - | gmx:100779239 | 150.599 |