Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05864 ATGTTTGTCTTAAGCGTGATGGATTCTCAGGCACGACAAGAGCAAGAGCAAGAGCAACAACAACTGGTGGTTGATATGTTAGCTAACAAGAATTCTGGAGAGAATGAGTTAGGAAGGAACAAAGGGAAAGAAGATGTGAGTGACAACATGGATGTTCCTCCAATCGCTGACGCGGACAAGGCCATAGAGGATCTCGATTCAGGCAAAAGGAAGCGATATCACCGCCACTCTCAACACCAGATACAACAGATGGAAATGTTCTATAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAAGCCTTGGGCGATGAGCTCGGGCTCGACCCTTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGTACCCAAGTAAAGGCTCAACAAGAACGCCATGACAATGCTCTTCTGAAGGGTGAGAATGAAAAGCTTTGTGCTGACAATGCTAGGTACAAGGAGGCACTGAGTCATGCTACATGCCCTACCTGTGGAGGGCCCCCTGTTGGTGAAATGTCCTTTGACGAACAACGCTTGAGAATTGAGAATACCCGATTAAGAGAAGAAATTCAAAGGATGTTGGGAATGACCGCAAAAATGATGGGAAAGCCTGTGACACCTCTCTCTCACAATCACATGCCTTCGTGCACGCTTGATCTTGGGGGTGGTAACTATGGAGCACAGTCAGGAATGATAGGGGAAATGTATGGAGGTGGTAACTTTCCCATATGGTCACTCCCTGTTCCTACGAAAGCTGATAAAACCTTGATTGTGGACCTTGCTGTTTCCGGAATGGAGGAACCGATAAGCTTGGCTGCCTCTAGTGAGCCTTTATGGAGGAACTGA 840 0.4714 MFVLSVMDSQARQEQEQEQQQLVVDMLANKNSGENELGRNKGKEDVSDNMDVPPIADADKAIEDLDSGKRKRYHRHSQHQIQQMEMFYKECPHPDDKQRKALGDELGLDPLQIKFWFQNKRTQVKAQQERHDNALLKGENEKLCADNARYKEALSHATCPTCGGPPVGEMSFDEQRLRIENTRLREEIQRMLGMTAKMMGKPVTPLSHNHMPSCTLDLGGGNYGAQSGMIGEMYGGGNFPIWSLPVPTKADKTLIVDLAVSGMEEPISLAASSEPLWRN. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05864 279 FunFam Homeobox-leucine zipper protein HDG1 57 143 - -
Seca3g05864 279 Gene3D - 59 141 - -
Seca3g05864 279 ProSiteProfiles START domain profile. 248 279 IPR002913 GO:0008289
Seca3g05864 279 CDD homeodomain 70 128 IPR001356 GO:0003677
Seca3g05864 279 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Seca3g05864 279 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Seca3g05864 279 MobiDBLite consensus disorder prediction 29 54 - -
Seca3g05864 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 278 IPR042160 -
Seca3g05864 279 SUPERFAMILY Homeodomain-like 66 131 IPR009057 -
Seca3g05864 279 MobiDBLite consensus disorder prediction 36 50 - -
Seca3g05864 279 SMART HOX_1 68 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05864 Seca-Chr3 121443406 121444566 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05864 30 277 Homeobox Transcription Factor Family AT4G04890 53.488 5.95e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g05864 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05864 K09338 - jre:108990742 300.441