Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05863 ATGTCAGCTAACAAGAATTCTGCAGAGAATGAGTCGGGAAGGAACAAATGGAAGGAAGTTGTGAGTGACAACATGGAAGTTCCTCCTGTCGCTGACGCTGATCCGGCCCTAGAGGATCTCGATTCAGATGACAAGCAAAGGAAAGCCTTGGGCGATGCGCTCGGGCTCGACCCTTTACAAGTCAAGTTTTGGTTCCAGAACAAGCGTACCCAAGTAAAGGTTCAACAAGAACACCATGAGAATGCTCTTCTGAATGGTAGAATGAAAAGCTTCGTGCTGACAATGCTAGATTCAAAGGATGTCGGGAATGACAACGAAAATGATGGGAGAGCCTGTGACACCGCTCTCTTACAATCACATGCCTTCGTGCACGCTTGA 378 0.4762 MSANKNSAENESGRNKWKEVVSDNMEVPPVADADPALEDLDSDDKQRKALGDALGLDPLQVKFWFQNKRTQVKVQQEHHENALLNGRMKSFVLTMLDSKDVGNDNENDGRACDTALLQSHAFVHA. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05863 125 CDD homeodomain 43 76 IPR001356 GO:0003677
Seca3g05863 125 ProSiteProfiles 'Homeobox' domain profile. 45 75 IPR001356 GO:0003677
Seca3g05863 125 Gene3D - 39 88 - -
Seca3g05863 125 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 42 86 IPR042160 -
Seca3g05863 125 Pfam Homeodomain 44 73 IPR001356 GO:0003677
Seca3g05863 125 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g05863 125 SUPERFAMILY Homeodomain-like 43 86 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05863 Seca-Chr3 121437283 121438160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05863 43 84 Homeobox Transcription Factor Family AT4G21750 71.429 6.81e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g05863 Homeodomain 4.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05863 K09338 - gmx:100793758 83.5741