Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05848 ATGCGGAATTGGGGGAAATGGGTTTTTGAAATCCGTGAGCCAAGGAAGAAATCGAGAATATGGCTAGGGACATTCCCCACACCAGAAATGGCAGCAAGAGCACATGACGTGGCAGCTTTGAGCGTCAAAGGAACCTCTGCCATTCTCAACTTCCCTCACCTCGCCACGTGTTTCCCTCGTCCTGCTTCTTTAGCCCCTCGTGATGTTCAAGCAGCTGCTGCAAAAGCTGCTCAAATGGATAACTTCGAATTGCCTTCTTCAACGATGGATGTTTCAAACATATACATTAATTGGATGTTGTATCTTGGTCATTACTGTATATTGTTGAGGTTAGTTGTGTATAACATATTTATAAGTAGAAGAAAGGTTCATAGTTTTCTCAATTATTGTTTACTATTTGTATAA 405 0.4148 MRNWGKWVFEIREPRKKSRIWLGTFPTPEMAARAHDVAALSVKGTSAILNFPHLATCFPRPASLAPRDVQAAAAKAAQMDNFELPSSTMDVSNIYINWMLYLGHYCILLRLVVYNIFISRRKVHSFLNYCLLFV. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05848 134 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Seca3g05848 134 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Seca3g05848 134 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Seca3g05848 134 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Seca3g05848 134 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Seca3g05848 134 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 82 - -
Seca3g05848 134 Pfam AP2 domain 3 43 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05848 Seca-Chr3 121006887 121007291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05848 1 80 AP2-EREBP Transcription Factor Family AT5G11590 83.750 1.56e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g05848 AP2 5.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05848 K09286 - ming:122075956 145.976