Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05839 ATGGATCAAGAAATGGAAGATATTGAGTGTCAAACTTTACACAAAGAGACAGTACGTGATCAGGAAACACCTGATAACATCTTTCATAAGGGAAAACGTCCTGTGATTCTTAAGTTTGATGATGTTGTATATAAAATTAAGACCAAGAAAGGTGGACTATTTGAGAAGAAAAAAAAAGCAGAAGAGAAAGTGATACTGAAAGGAGTGACAGGTATTGTTCAACCAGGTGAGATGTTAGCCATGCTTGGTCCATCTGGCAGTGGCAAAACAACTCTGCTAACAGCATTGGGAGGGAGGCTTGGAGGGAAACTTTATGGAAGCATAACTTACAATGGTGAATCCTTCTCAAATTCAATGAAGAGGAACACTGGCTTTGTTACCCAAGATGATGTTCTTTACCCTCACTTGACTGTGACTGAGACACTAGTTTTCACTGCACTTCTTAGATTGCCTAATAGTGTTACTAAAGAACAGAAAATTGGGCATGCAAAAGCTGTGATAGATCAACTTGGTTTAACCAAGTGCAAGGATAGCATTGTTGGAAGCCCACATCTGAGAGGGGTGTCTGGTGGGGAGAGAAAAAGGGTTAGCATTGGACAAGAGTTGCTCATAAACCCAAGCTTGTTGTTTCTGGATGAACCCACTTCTGGCCTAGATTCAACCACAGCACAGAGGATTGTCTCAACTTTGTGGGAGCTAGCATGTGGAGGGAGAACTGTTGTGATGACAATACACCAACCTTCAAGTAGGCTATACTACATGTTTCATAAGGTGTTATTGCTAGCAGAAGGAAACCCCTTGTATTTTGGAAAGGGGTCTGAAGCCATTGATTATTTTTCTAACATTGGATATTCCCCAGCAATGGCCATGAACCCCTCAGACTTCCTTTTGGATCTTGCAAACGGTATCTACACTGATGACATGAATCAGGACCATACCATAGATAAACAACAATTGATTTCGGCATTTAAGAGCAACTTTGCTGCACAATTGAAGTCAGTACATCAAGAAATCAGTGACTCTGACCAAAATCAGGGTAGATTTCAGGACACAGGCTCTGAAAAATGGCCTACCAGCTGGTCACAGCAATTCCTTGTATTGTTAAGAAGAGACGTCAAAGAGAGAAAGTATGAGTCCTTCTCTGGCCTGCGGATTTTTCAGGTCCTTGTGGTTGCACTTATTTCAGGACTACTGTGGTATAAATCAGATATTTCACACTTACAGGATCAGGTAAAATTTTCATATAAAATAAAAGTTTAA 1260 0.4056 MDQEMEDIECQTLHKETVRDQETPDNIFHKGKRPVILKFDDVVYKIKTKKGGLFEKKKKAEEKVILKGVTGIVQPGEMLAMLGPSGSGKTTLLTALGGRLGGKLYGSITYNGESFSNSMKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNSVTKEQKIGHAKAVIDQLGLTKCKDSIVGSPHLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWELACGGRTVVMTIHQPSSRLYYMFHKVLLLAEGNPLYFGKGSEAIDYFSNIGYSPAMAMNPSDFLLDLANGIYTDDMNQDHTIDKQQLISAFKSNFAAQLKSVHQEISDSDQNQGRFQDTGSEKWPTSWSQQFLVLLRRDVKERKYESFSGLRIFQVLVVALISGLLWYKSDISHLQDQVKFSYKIKV. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05839 419 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Seca3g05839 419 Gene3D - 55 282 IPR027417 -
Seca3g05839 419 CDD ABCG_EPDR 34 270 - -
Seca3g05839 419 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 288 IPR003439 GO:0005524
Seca3g05839 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 281 IPR027417 -
Seca3g05839 419 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 22 415 - -
Seca3g05839 419 FunFam ABC transporter G family member 22 53 282 - -
Seca3g05839 419 Pfam ABC transporter 66 216 IPR003439 GO:0005524
Seca3g05839 419 SMART AAA_5 75 265 IPR003593 GO:0016887
Seca3g05839 419 Pfam ABC-2 type transporter 245 371 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05839 Seca-Chr3 120781400 120784908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05839 65 249 Calmodulin-binding Proteins AT2G36910 27.979 1.18e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05839 K05681 - gmx:100816135 615.15