Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05838 ATGGGAGTTCCAGACAAAGACCCTCTTTCCCAATTGAGTTTACCTCCTGGATTTCGGTTTTACCCCACCGACGAGGAGCTCCTCGTTCAGTATCTATGCCGTAAGGTTGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATCGACTTGTACAAGTTCGACCCCTGGGTTCTTCCAAGCAAAGCAATTTTCGGGGAGAAAGAATGGTACTTTTTCAGCCCTAGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCTGGGTACTGGAAAGCCACAGGAACCGATAAGATCATCACCACTGAAGGTAGAAAAGTTGGTATAAAAAAAGCCCTTGTTTTCTATGTTGGCAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGCCTTCTAGACTCTTCGCGAAAGAACACTGGCACCAAGGTAAATTCACCCTTGGATGACTGGGTTTTGTGCCGGATATACAAGAAGAACTCAAGCGCACAAAAAGCTGCATCAAACGGCGGCGTTTCGAGCAAAGAGTACACTCAATACAGCAACGGTTCGTCTTCCTCGTCGTCGTCCCACCTCGACGACGTTCTGGAATCGTTGCCTGAGATTGACGACCGGTGCTTCATGCTGCCACGTGTCAATTCGCTGAGAACGCTGCAGCAGCGGGAGGAGGAGAAGCTCAATCTTCAGAACCTCGGTGCAGGGAGTTTGATGGATTGGGCTAACCCAGCGGTTCTGAACACGGTTTCGGAGTTCGGTTCGGGGAACCAAGTGGTTCAGGGGCAAGCTCAGGGGATGGTGAATTTCGGTGGCTGTAATGACCTTTATGTCCCTTCGGTTCCTTCGCTGTGCCACGTGGACTCGTCAGAGAAGATGGGGAAACCGGTGGAGGAAGAGGTTCAGAGCGGAGTCAGAACCCAACGGGTCGAGAATTCCGGGTTTTTCCAGCGCGGTCCGAATGATTTCACGCAGGGATTCTCAAATTCGGTGGACCCGTATGGGTTCAGGTACCCGGTTCAGACGGTTGGGTTTGGGTTCGGGCAATGA 1065 0.5108 MGVPDKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNTGTKVNSPLDDWVLCRIYKKNSSAQKAASNGGVSSKEYTQYSNGSSSSSSSHLDDVLESLPEIDDRCFMLPRVNSLRTLQQREEEKLNLQNLGAGSLMDWANPAVLNTVSEFGSGNQVVQGQAQGMVNFGGCNDLYVPSVPSLCHVDSSEKMGKPVEEEVQSGVRTQRVENSGFFQRGPNDFTQGFSNSVDPYGFRYPVQTVGFGFGQ. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05838 354 Gene3D NAC domain 23 172 IPR036093 GO:0003677|GO:0006355
Seca3g05838 354 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Seca3g05838 354 FunFam NAC domain-containing protein 72-like 23 171 - -
Seca3g05838 354 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Seca3g05838 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 207 - -
Seca3g05838 354 MobiDBLite consensus disorder prediction 172 199 - -
Seca3g05838 354 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05838 Seca-Chr3 120762061 120763877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05838 1 281 NAC Transcription Factor Family AT3G15500 62.245 1.49e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g05838 NAM 7.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05838 - - gmx:100170718 562.377