Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05809 ATGTGTATGTTTTTAAAACCTGTCACATCTTCTGTTTTCCTTTTTTCTTTCGATTACATCTTTTTTTTCTTTACTCTAAATATGCAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAACCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTGATGTTATGTTCCTTGAATGGCATTGCTTGCAGGTTCGTTCTGCAACTCTGGATACTTGGCTTCCAGAGCAAGTTGCTTTCATTCATTAATTTCTTGTTTTGGTCCTATACAGCAATGGGAAATGAGAAAGCTAATAGTTACTGGGAAGCAGAACTACCACCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCCAAAAACACCTTCTGGACTGCGGGGAGAGAAAACTCCTTCACATTGGCAGAGGCCTGTGGAAAGACATGGGCATGGTTATGCCACTGTTTCTGATAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAACTCCTGAGCAGGTAACTCCTGTTACCAAACCACAGCATGTTGAGAAAGTGGAACCAGTAGCACCACAACCACAAGCTGAAACTTCAAAACAGGCTACAAACACAGCTCAAAATGCCCCTCCAAGAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAAAATGGCTCTGAAGCAGCTGGTGCTACAGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGAGAAGACTGGTCCGCCAAAAGCAGTTGAGAATACTCCCCAGTCTGCATCTGGAATTGAGGATCTGTTTAAGGACTCACCTTCTGTGACACCAAGCTTAGCTCCATCACAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGAGCAATATGGTGTCTCCATTTTCTTTACATCAACAGCAGCTTGCCATGCTAGCACAGCAGCAGTCTCTTCTCATGGCTGCTGCTGCTAAATCTACTGGTGGGGATCCCAAGTATCCTGCTAGCATGCTACAACCTAGGCCCAATGTTCTTGTCCAAAATTGGCCAGCTACTGGGTACCCAAATTCTGGGGTAATGTCCTTGGGTGGTCAGGGAGATCTGCAGAAACTTATGCAGACTAGGAACATGACTCCAGCACATGCTGCCGGGAGCCCTGTTCAATATCCACCATCTGGTTTCTATGCCATGGGGCAAGTGGGTCCAGTCAATGGTATGATGACAATAGGAACGAGTAAACCTCAGTCAACCACTCCAGTGTCATCAACCACTTCAAAGTCTGCAAAGGATTATGATTTTTCCTCTTTAACTCAAGGGATGTTTGCGAAGCAATGA 1503 0.4351 MCMFLKPVTSSVFLFSFDYIFFFFTLNMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVMLCSLNGIACRFVLQLWILGFQSKLLSFINFLFWSYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPKTPSGLRGEKTPSHWQRPVERHGHGYATVSDNTFEERKKIQPSNAIPATRISVPAPPKTPEQVTPVTKPQHVEKVEPVAPQPQAETSKQATNTAQNAPPRVDYATDLFNMLSMDGPSENGSEAAGATADDNNWAGFQSEKTGPPKAVENTPQSASGIEDLFKDSPSVTPSLAPSQPQKDVKNDIMSLFEKSNMVSPFSLHQQQLAMLAQQQSLLMAAAAKSTGGDPKYPASMLQPRPNVLVQNWPATGYPNSGVMSLGGQGDLQKLMQTRNMTPAHAAGSPVQYPPSGFYAMGQVGPVNGMMTIGTSKPQSTTPVSSTTSKSAKDYDFSSLTQGMFAKQ. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05809 500 MobiDBLite consensus disorder prediction 155 179 - -
Seca3g05809 500 MobiDBLite consensus disorder prediction 243 260 - -
Seca3g05809 500 ProSiteProfiles ARF GTPase-activating proteins domain profile. 28 162 IPR001164 GO:0005096
Seca3g05809 500 PRINTS HIV Rev interacting protein signature 40 59 IPR001164 GO:0005096
Seca3g05809 500 PRINTS HIV Rev interacting protein signature 59 76 IPR001164 GO:0005096
Seca3g05809 500 MobiDBLite consensus disorder prediction 292 320 - -
Seca3g05809 500 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 28 500 IPR044520 GO:0005096
Seca3g05809 500 Pfam Putative GTPase activating protein for Arf 30 155 IPR001164 GO:0005096
Seca3g05809 500 SMART arf_gap_3 29 162 IPR001164 GO:0005096
Seca3g05809 500 MobiDBLite consensus disorder prediction 273 339 - -
Seca3g05809 500 MobiDBLite consensus disorder prediction 201 260 - -
Seca3g05809 500 SUPERFAMILY ArfGap/RecO-like zinc finger 28 156 IPR037278 -
Seca3g05809 500 Gene3D Arf GTPase activating protein 25 161 IPR038508 -
Seca3g05809 500 CDD ArfGap 31 149 - -
Seca3g05809 500 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05809 Seca-Chr3 119875860 119882277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05809 31 155 C2H2 Transcription Factor Family AT4G05330 38.636 1.20e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05809 K12486 - gmx:100789910 672.93