Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05806 ATGGAGTACCTATTATTCTTCAATTCAAAAGCAACAGAAAATCCAAAATTACAATCACCAAACAGGAGTGAAGTGAACAGAGAAATCAATGTCAGGTTGTTTGATACATCTGGTGGCAGTGGTTGTTCTGGGTCTGAGCTAATAGATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAGTTCATCATCAAATAAGGATAGCAAAACATCTATAATTACTTTTGAAAGTTCCCAAGATGATTCCAGTGCTAAAAAAGAATTATCTAAAGAGGAGCCATTTGAAACTTCTCATGCACCAGAGCTCACTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTGTGTCCAGGAAGTGATTCCAGGAACCTATCTTTCTCTACTGGGAAGAAATGTAAGACCAATGGTCAGAGCATACAATATCCACGGTGCCAGGTTGAAGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCATCGCAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGATTATAGCTGGTTTGGAAAGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGACTGTTAGAGTTTGATGAAAAAAAGAGAAGTTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGTAAACCTCACCCTGAAGCTGTCCAATTAAGTCAATCAGCTTTGTCTTCCTCACAATGTGGTGAGAGGCAACAGACCAATCCTTTCTCTTATTCAAGGACTGCTACAAATTTAGCCTGGCAAGATCTACACAGAAGCAAGCTCCCCCATACAAAAGATTTTCTCTTGAAACCTGCAAAAGCCAATAATGAGATACCGAGTATTGTCACTATGCTTTCTGGTGATTCCAACGTCCGATTAACATCCAAAGGTGTTGCAACCAAGAGTAATATAGAAGATTCCACCACCTCCTCTGATCCAAATGCTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATATGAGACTAAATCCATTTCTCTAGAACACTCCAATCACACAACCACTACCTCTCAGCCCATAATACATACAACGGGTCAGCGCTTTCCCCCTACTCCATCTGAATATTGGCATAGTGATCAACAAGTGAATTCCAGCACATGGATCTCATACTCAAATTGTGATGATAGTAATCGCTTTCATGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGATTTCCTTATGACCAGTTGGATTAA 1251 0.4077 MEYLLFFNSKATENPKLQSPNRSEVNREINVRLFDTSGGSGCSGSELIDASSSRSSKSASISSSSNKDSKTSIITFESSQDDSSAKKELSKEEPFETSHAPELTLKLGKRLYFEDVCPGSDSRNLSFSTGKKCKTNGQSIQYPRCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVIIAGLESRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPHPEAVQLSQSALSSSQCGERQQTNPFSYSRTATNLAWQDLHRSKLPHTKDFLLKPAKANNEIPSIVTMLSGDSNVRLTSKGVATKSNIEDSTTSSDPNATQDFHRALSLLSNNSWGSYETKSISLEHSNHTTTTSQPIIHTTGQRFPPTPSEYWHSDQQVNSSTWISYSNCDDSNRFHEFQLFREPYESGFPYDQLD. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05806 416 MobiDBLite consensus disorder prediction 34 100 - -
Seca3g05806 416 Gene3D - 135 206 IPR036893 GO:0003677|GO:0005634
Seca3g05806 416 MobiDBLite consensus disorder prediction 81 99 - -
Seca3g05806 416 MobiDBLite consensus disorder prediction 225 244 - -
Seca3g05806 416 FunFam Squamosa promoter-binding-like protein 14 136 206 - -
Seca3g05806 416 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 350 IPR044817 GO:0003677
Seca3g05806 416 Pfam SBP domain 145 218 IPR004333 GO:0003677
Seca3g05806 416 MobiDBLite consensus disorder prediction 36 80 - -
Seca3g05806 416 MobiDBLite consensus disorder prediction 348 373 - -
Seca3g05806 416 MobiDBLite consensus disorder prediction 209 244 - -
Seca3g05806 416 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677
Seca3g05806 416 SUPERFAMILY SBT domain 143 224 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05806 Seca-Chr3 119729612 119732481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05806 1 376 SBP-box Gene Family AT5G43270 37.437 6.72e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g05806 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05806 - - gmx:100796013 490.345